Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	EICPM050-G02_pDNR-R	1077

Contig Map:

(ProjectName=FEICP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[EICPM050-G02_pDNR-R](Singleton Sequence)

EICPM050-G02_pDNR-R 1077  bases 
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCTAAAATTGAATAGCATTCATCACAAATAAATGTCTGAGGCAACACAATTCTCACAGCAAAAAAAAAAAAAAAAAAAATCACTGCAGTAGCGATGTTTCAAAACCAAAAAAAAAACCAATAAAATCCTCAACTTGATGCAGTAAAAATCTAAGGAAATAAGCTGAAATTTAAATATTTTGGCAAAATAGAAAGGGAAGATTAATTTAAGTTTGGTTGGGAGGATATTTATCTTCCAAATTTCCAGCAAATCTGCACCTCTGGTTTTCTAATCCTTCCTCAGTTCAATGAACTCCTGTCGGATACCCGTTGCATTAACAATGATAATTTCTAGCTTATCTCCAGTGTATATATCTTTTTCTGTAGCTGATGCAAAAACATCTTTGACTAAATCAACTGCCTCAAATTCAAAGAGGGGCGTCACAGCATCCCTAGCAGGTAATAACAAAGGACTAGGGGACTTCAGCTGGTTGTCTAAAACTGGCATTATAAGGGTTCCACCAGTTCCTTGGCAACTGTACCCCACCCTCTCATAGGATCCAACAGCATCATATGAATAAACACAACCTTTCCCTTCATTGTCCAGCCCACCTAGAATATTGAATGTATAGTAAGGGAAGAACCTTTTGTAGTAAAGAGTATTTGAAAGGAGCCGAGCCATTGCAGGACAGCTCATTTGTTTATTGTGTTGATGTTGATATATAAGGTGCTTTGCAGCCAAATTCTTCTGCAGGGCTTTCATATCTCCCTGAATCCAGAAGATGCCAATACACATTTGTCGGCTAGCTTGCAGATCTTAGAGTAGTCGCGTGTGTATATACTGTATCCGACGGAAAGACGGTGCTGCCGCCCCCACACAGTATCGGTTCCGGCGATCGCCACGCATGTACCTCCGTTGTTCTCGTAACCCAGTCCCCTCTCACCGCCATCCGTAAAGCTGGATCGGAGAGCGGCCTGATGATTCCTGATTCCGCTAGACAGATGCTCGTCGATGTTTTCTTCCCTGCAGTCGGGAGAAGCAGCAGACGACAGCAGCTGGCCGGGTA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ABK21828.1	unknown	Picea sitchensis	229	284 bits (727)	2e-91	133/160 (83%)	151/160 (94%)	+2

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[12 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	03050	Proteasome	[PATH:ath03050]	EICPM050-G02_pDNR-R	AT3G60820	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G60820	AT3G60820	chloroplast	GO:0009507	chloroplast
AT3G60820	AT3G60820	plasma membrane	GO:0005886	plasma membrane
AT3G60820	AT3G60820	proteasome core complex	GO:0005839	other intracellular components
AT3G60820	AT3G60820	proteasome core complex	GO:0005839	other intracellular components
AT3G60820	AT3G60820	peptidase activity	GO:0008233	hydrolase activity
AT3G60820	AT3G60820	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT3G60820	AT3G60820	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT3G60820	AT3G60820	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT3G60820	AT3G60820	"defense response to fungus, incompatible interaction"	GO:0009817	response to stress
AT3G60820	AT3G60820	"defense response to fungus, incompatible interaction"	GO:0009817	response to abiotic or biotic stimulus
AT3G60820	AT3G60820	proteasome complex	GO:0000502	other intracellular components
AT3G60820	AT3G60820	plasma membrane	GO:0005886	plasma membrane

Gene Network Informations
Gene Network	Interact with..
EICPM050-G02_pDNR-R[interact with..]	Contig2599 EICPM038_F05_pDNR-F EICPS043_E03_pDNR-F Contig4355 EICPM020_F08_pDNR-F EICPM038_G03_pDNR-F Contig3833 Contig2538 EICPM007_H10_pDNR-R Contig4310 EICPS025_D09_pDNR-F Contig3420 Contig3576

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig2599	1085	ref	XP_002513374.1	proteasome subunit alpha type, putative	Ricinus communis	235	426 bits (1095)	e-117	217/235 (92%)	225/235 (95%)	+3
EICPM038_F05_pDNR-F	1034	ref	XP_002278126.1	PREDICTED: hypothetical protein	Vitis vinifera	235	402 bits (1032)	e-112	204/220 (92%)	212/220 (96%)	+3
EICPS043_E03_pDNR-F	747	ref	XP_002513374.1	proteasome subunit alpha type, putative	Ricinus communis	235	291 bits (745)	5e-77	145/159 (91%)	152/159 (95%)	+1
Contig4355	1036	sp	Q9XG77.1	PSA6_TOBAC RecName: Full=Proteasome subunit alpha type-6; AltName: Full=20S proteasome alpha subunit A; AltName: Full=20S proteasome		246	461 bits (1186)	e-128	224/246 (91%)	243/246 (98%)	+1
EICPM020_F08_pDNR-F	1093	gb	ABN07962.1	ATP-citrate lyase/succinyl-CoA ligase	Medicago truncatula	608	519 bits (1337)	e-145	257/323 (79%)	284/323 (87%), Gaps = 1/323 (0%)	+2
EICPM038_G03_pDNR-F	1046	gb	ABN07962.1	ATP-citrate lyase/succinyl-CoA ligase	Medicago truncatula	608	514 bits (1323)	e-151	250/283 (88%)	269/283 (95%)	+3
Contig3833	1262	ref	XP_002511119.1	proteasome subunit alpha type, putative	Ricinus communis	250	427 bits (1098)	e-117	213/250 (85%)	228/250 (91%)	+2
Contig2538	854	ref	XP_002517100.1	proteasome subunit beta type, putative	Ricinus communis	202	352 bits (902)	3e-95	169/196 (86%)	187/196 (95%)	+1
EICPM007_H10_pDNR-R	1014	ref	XP_002324040.1	predicted protein	Populus trichocarpa	351	466 bits (1199)	e-129	230/252 (91%)	242/252 (96%)	+3
Contig4310	1357	gb	ABN08957.1	H+-transporting two-sector ATPase, C (AC39) subunit	Medicago truncatula	351	669 bits (1727)	0.0	327/350 (93%)	339/350 (96%)	+1
EICPS025_D09_pDNR-F	856	ref	XP_002529223.1	methylenetetrahydrofolate reductase, putative	Ricinus communis	609	291 bits (745)	6e-77	139/180 (77%)	158/180 (87%)	+2
Contig3420	1002	ref	XP_002527995.1	proteasome subunit beta type 6,9, putative	Ricinus communis	231	394 bits (1012)	e-108	198/231 (85%)	211/231 (91%)	+1
Contig3576	1184	gb	ACG40493.1	proteasome subunit beta type 7-A precursor	Zea mays	273	463 bits (1192)	e-128	222/249 (89%)	240/249 (96%)	+1