Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	Contig3420	1002

Contig Map:

(ProjectName=FEICP SequenceName=Contig3420):
EICPM027-E05_pDNR-R:
EICPM027_E05_pDNR-F:

Sequences View:[Contig3420](Contig Seguence)

1002 bases 
CTTTTTTTCTTTTTTTACGCGGCTTGCCGGGATTCGGCCATTACGGCCGGGGACCGAAGCAAAGCAATCACCGAAACCTTTTCCATGGATCCTCATCTAAGCGCCGCGCTCTCCATGGGCACGACGATCATTGGCGTCACCTACGACGGTGGTGTTGTCCTCGGCGCCGATTCACGGACCAGTACAGGGATGTATGTCGCTAACCGTGCATCGGATAAGATCACGCAACTCACTGACAACGTTTATGTGTGCCGCTCTGGATCGGCTGCTGATTCTCAAATCGTATCTGATTATGTTCGCTATTTTCTCAATCAACATACGATTCAACTCGGACAGCCTGCTACAGTCAAAGTTGCGGCCAATTTACTTAGGTTGTTTTCATATCAGAACAAGAATATGTTGCAAACTGGCCTTATTGTTGGTGGTTGGGATAAATATGAAGGAGGACAAATTTACTCTATTCCCCTTGGAGGAACAATTTTGAAACAACCCTTCACCATTGGAGGTTCTGGTTCCAGTTATCTGTATGGATTTTTTGATCAAGCATGGAAGGAAGGGATGACCAAAGATGAAGCTGAGAAATTGGTGGTGAAGGCCGTCTCTCTTGCCATTGCTCGTGATGGTGCCAGTGGAGGTGTTGTTCGTACTGTTATTGTGAATGGTGAAGGAGTGACGAGGAACTTCTACAGTGGGGACTCGCTTCCACTATGGCACGAAGAGTTAGAACCTCATAACTCTTTGCTTGATATACTCTCATCTGCTGCCGCCGGCCCTGAGCCAATGATCATATAATAAATACTCATTGCCTTTCCGTGCCAAATTTAATTATTTTCAAACATCCGTTTTTATTGTTTTAGTCTGCTTTAATTTAAACAGCCATTTAGCAACCAAAACAAGCTTAATTGTCTCCCATGAATAGCATGAGGTTTTTAATGGTTTATTCTGTTAAATTTCTAAGAGGTATTTACTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequences View:[Contig3420](Singleton Sequence)

Contig3420 1002  bases 
CTTTTTTTCTTTTTTTACGCGGCTTGCCGGGATTCGGCCATTACGGCCGGGGACCGAAGCAAAGCAATCACCGAAACCTTTTCCATGGATCCTCATCTAAGCGCCGCGCTCTCCATGGGCACGACGATCATTGGCGTCACCTACGACGGTGGTGTTGTCCTCGGCGCCGATTCACGGACCAGTACAGGGATGTATGTCGCTAACCGTGCATCGGATAAGATCACGCAACTCACTGACAACGTTTATGTGTGCCGCTCTGGATCGGCTGCTGATTCTCAAATCGTATCTGATTATGTTCGCTATTTTCTCAATCAACATACGATTCAACTCGGACAGCCTGCTACAGTCAAAGTTGCGGCCAATTTACTTAGGTTGTTTTCATATCAGAACAAGAATATGTTGCAAACTGGCCTTATTGTTGGTGGTTGGGATAAATATGAAGGAGGACAAATTTACTCTATTCCCCTTGGAGGAACAATTTTGAAACAACCCTTCACCATTGGAGGTTCTGGTTCCAGTTATCTGTATGGATTTTTTGATCAAGCATGGAAGGAAGGGATGACCAAAGATGAAGCTGAGAAATTGGTGGTGAAGGCCGTCTCTCTTGCCATTGCTCGTGATGGTGCCAGTGGAGGTGTTGTTCGTACTGTTATTGTGAATGGTGAAGGAGTGACGAGGAACTTCTACAGTGGGGACTCGCTTCCACTATGGCACGAAGAGTTAGAACCTCATAACTCTTTGCTTGATATACTCTCATCTGCTGCCGCCGGCCCTGAGCCAATGATCATATAATAAATACTCATTGCCTTTCCGTGCCAAATTTAATTATTTTCAAACATCCGTTTTTATTGTTTTAGTCTGCTTTAATTTAAACAGCCATTTAGCAACCAAAACAAGCTTAATTGTCTCCCATGAATAGCATGAGGTTTTTAATGGTTTATTCTGTTAAATTTCTAAGAGGTATTTACTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002527995.1	proteasome subunit beta type 6,9, putative	Ricinus communis	231	394 bits (1012)	e-108	198/231 (85%)	211/231 (91%)	+1

KEGG Pathway	GO
Contig3420[1 Pathway]	Contig3420[19 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	03050	Proteasome	[PATH:ath03050]	Contig3420	AT4G31300	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT4G31300	AT4G31300	plasma membrane	GO:0005886	plasma membrane
AT4G31300	AT4G31300	vacuole	GO:0005773	other cytoplasmic components
AT4G31300	AT4G31300	vacuole	GO:0005773	other intracellular components
AT4G31300	AT4G31300	response to salt stress	GO:0009651	response to stress
AT4G31300	AT4G31300	response to salt stress	GO:0009651	response to abiotic or biotic stimulus
AT4G31300	AT4G31300	proteasome core complex	GO:0005839	other intracellular components
AT4G31300	AT4G31300	proteasome core complex	GO:0005839	other intracellular components
AT4G31300	AT4G31300	peptidase activity	GO:0008233	hydrolase activity
AT4G31300	AT4G31300	peptidase activity	GO:0008233	hydrolase activity
AT4G31300	AT4G31300	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT4G31300	AT4G31300	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT4G31300	AT4G31300	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT4G31300	AT4G31300	response to zinc ion	GO:0010043	other biological processes
AT4G31300	AT4G31300	proteasome complex	GO:0000502	other intracellular components
AT4G31300	AT4G31300	regulation of plant-type hypersensitive response	GO:0010363	response to stress
AT4G31300	AT4G31300	regulation of plant-type hypersensitive response	GO:0010363	other cellular processes
AT4G31300	AT4G31300	plasma membrane	GO:0005886	plasma membrane
AT4G31300	AT4G31300	response to salt stress	GO:0009651	response to stress
AT4G31300	AT4G31300	response to salt stress	GO:0009651	response to abiotic or biotic stimulus

Gene Network Informations
Gene Network	Interact with..
Contig3420[interact with..]	Contig4355 Contig3833

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig4355	1036	sp	Q9XG77.1	PSA6_TOBAC RecName: Full=Proteasome subunit alpha type-6; AltName: Full=20S proteasome alpha subunit A; AltName: Full=20S proteasome		246	461 bits (1186)	e-128	224/246 (91%)	243/246 (98%)	+1
Contig3833	1262	ref	XP_002511119.1	proteasome subunit alpha type, putative	Ricinus communis	250	427 bits (1098)	e-117	213/250 (85%)	228/250 (91%)	+2