Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	EICPM007_H10_pDNR-R	1014

Contig Map:

(ProjectName=FEICP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[EICPM007_H10_pDNR-R](Singleton Sequence)

EICPM007_H10_pDNR-R 1014  bases 
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTAAGGTACATAATGTGGTGAAGTGCAGGTAAATAGAAGTACAGAATCAAAGGTAACATTTACTTTGAACATTACACAGATGGGAGAGGAAGATGTTCGGACGGGCAGAAATGTAAAAATCAGAAAATAAAAACCACACTGTCATGAACTCTTGATTTCTGATTCTGGGCCACACATTCCGATATCCACATCAAGTTCCTTATCTCCTGCTCCCTCAGTCTAATATATGCAAAGAATACTGCGTAGTGGAACTGCTGCTCAAATGCCAAGCAAAGCCTTTTCACTTCCTCCTCGTAAAATGCCTTGTCTAACATCTGGCTTTCACCATAAGATAGTTTGGAGAATATCGACTGATACGGCGGGTATTTCTCCAACACACCACGAACCTGATCAAAATCCTCACAAACAGCAAGTTCTTCATGTCCATACGGATATAATAAGCCAAAATTAGAATACAGCTTCCTCCGATCGTCGCGAGTCAGCTCAGTGCCAATACTATTTATAGTGATATTTACAGCTCTTCTGTCTGCTTCAAAAGACAGCAGATCACACATTATTTCAGAAGTTGCACCTCCAAGTTTCTTGCAGAATTGATAAAAGTCCTCTAGATATGCCTTGTAAAGAGTGTTCCTCATGATTTCAATATTCATATCATCCAAATCCTCTGATGTGATGCACTCAGAAAAGTATGGAGCCAATGGTGTGTCAACAAGAACCAACCTATAGAGCTCTCGCATGTTTTGGGCAACCGCAAGGGTGGCAATGCTCTCAAACATGCCCAAAGGATGGCATTTCTCTAATAATTCATGCACATCTCTCTCATGCAATGTACCAGTGACATAAGCACACATTATCAATCATGTGGCCATATGTATGTACTCCAGAGGTGACATGGTCTGGGCTGCACACATGTGCTATACTCATCACATAGAGTGCACTTTCCACAGTGTGTGATGTAGGGAGACGTCGTCTGAGTACGACC

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002324040.1	predicted protein	Populus trichocarpa	351	466 bits (1199)	e-129	230/252 (91%)	242/252 (96%)	+3

KEGG Pathway	GO
NoContigFind[2 Pathway]	NoContigFind[57 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Cellular Processes	Transport and Catabolism	04145	Phagosome	[PATH:ath04145]	EICPM007_H10_pDNR-R	AT3G28710	FEICP
Metabolism	Energy Metabolism	00190	Oxidative phosphorylation	[PATH:ath00190]	EICPM007_H10_pDNR-R	AT3G28710	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G28710	AT3G28710	plasma membrane	GO:0005886	plasma membrane
AT3G28710	AT3G28710	plasma membrane	GO:0005886	plasma membrane
AT3G28710	AT3G28710	vacuole	GO:0005773	other cytoplasmic components
AT3G28710	AT3G28710	vacuole	GO:0005773	other cytoplasmic components
AT3G28710	AT3G28710	vacuole	GO:0005773	other intracellular components
AT3G28710	AT3G28710	vacuole	GO:0005773	other intracellular components
AT3G28710	AT3G28710	hydrogen ion transmembrane transporter activity	GO:0015078	transporter activity
AT3G28710	AT3G28710	ATP synthesis coupled proton transport	GO:0015986	transport
AT3G28710	AT3G28710	ATP synthesis coupled proton transport	GO:0015986	other cellular processes
AT3G28710	AT3G28710	ATP synthesis coupled proton transport	GO:0015986	other metabolic processes
AT3G28710	AT3G28710	ATP synthesis coupled proton transport	GO:0015986	electron transport or energy pathways
AT3G28710	AT3G28710	plant-type vacuole	GO:0000325	other cytoplasmic components
AT3G28710	AT3G28710	plant-type vacuole	GO:0000325	other intracellular components
AT3G28710	AT3G28710	vacuolar membrane	GO:0005774	other membranes
AT3G28710	AT3G28710	vacuolar membrane	GO:0005774	other cytoplasmic components
AT3G28710	AT3G28710	vacuolar membrane	GO:0005774	other intracellular components
AT3G28710	AT3G28710	proton transport	GO:0015992	transport
AT3G28710	AT3G28710	"proton-transporting ATPase activity, rotational mechanism"	GO:0046961	hydrolase activity
AT3G28710	AT3G28710	"proton-transporting ATPase activity, rotational mechanism"	GO:0046961	transporter activity
AT3G28710	AT3G28710	plasma membrane	GO:0005886	plasma membrane
AT3G28710	AT3G28710	plasma membrane	GO:0005886	plasma membrane
AT3G28710	AT3G28710	vacuole	GO:0005773	other cytoplasmic components
AT3G28710	AT3G28710	vacuole	GO:0005773	other cytoplasmic components
AT3G28710	AT3G28710	vacuole	GO:0005773	other intracellular components
AT3G28710	AT3G28710	vacuole	GO:0005773	other intracellular components
AT3G28710	AT3G28710	hydrogen ion transmembrane transporter activity	GO:0015078	transporter activity
AT3G28710	AT3G28710	ATP synthesis coupled proton transport	GO:0015986	transport
AT3G28710	AT3G28710	ATP synthesis coupled proton transport	GO:0015986	other cellular processes
AT3G28710	AT3G28710	ATP synthesis coupled proton transport	GO:0015986	other metabolic processes
AT3G28710	AT3G28710	ATP synthesis coupled proton transport	GO:0015986	electron transport or energy pathways
AT3G28710	AT3G28710	plant-type vacuole	GO:0000325	other cytoplasmic components
AT3G28710	AT3G28710	plant-type vacuole	GO:0000325	other intracellular components
AT3G28710	AT3G28710	vacuolar membrane	GO:0005774	other membranes
AT3G28710	AT3G28710	vacuolar membrane	GO:0005774	other cytoplasmic components
AT3G28710	AT3G28710	vacuolar membrane	GO:0005774	other intracellular components
AT3G28710	AT3G28710	proton transport	GO:0015992	transport
AT3G28710	AT3G28710	"proton-transporting ATPase activity, rotational mechanism"	GO:0046961	hydrolase activity
AT3G28710	AT3G28710	"proton-transporting ATPase activity, rotational mechanism"	GO:0046961	transporter activity
AT3G28710	AT3G28710	plasma membrane	GO:0005886	plasma membrane
AT3G28710	AT3G28710	plasma membrane	GO:0005886	plasma membrane
AT3G28710	AT3G28710	vacuole	GO:0005773	other cytoplasmic components
AT3G28710	AT3G28710	vacuole	GO:0005773	other cytoplasmic components
AT3G28710	AT3G28710	vacuole	GO:0005773	other intracellular components
AT3G28710	AT3G28710	vacuole	GO:0005773	other intracellular components
AT3G28710	AT3G28710	hydrogen ion transmembrane transporter activity	GO:0015078	transporter activity
AT3G28710	AT3G28710	ATP synthesis coupled proton transport	GO:0015986	transport
AT3G28710	AT3G28710	ATP synthesis coupled proton transport	GO:0015986	other cellular processes
AT3G28710	AT3G28710	ATP synthesis coupled proton transport	GO:0015986	other metabolic processes
AT3G28710	AT3G28710	ATP synthesis coupled proton transport	GO:0015986	electron transport or energy pathways
AT3G28710	AT3G28710	plant-type vacuole	GO:0000325	other cytoplasmic components
AT3G28710	AT3G28710	plant-type vacuole	GO:0000325	other intracellular components
AT3G28710	AT3G28710	vacuolar membrane	GO:0005774	other membranes
AT3G28710	AT3G28710	vacuolar membrane	GO:0005774	other cytoplasmic components
AT3G28710	AT3G28710	vacuolar membrane	GO:0005774	other intracellular components
AT3G28710	AT3G28710	proton transport	GO:0015992	transport
AT3G28710	AT3G28710	"proton-transporting ATPase activity, rotational mechanism"	GO:0046961	hydrolase activity
AT3G28710	AT3G28710	"proton-transporting ATPase activity, rotational mechanism"	GO:0046961	transporter activity

Gene Network Informations
Gene Network	Interact with..
EICPM007_H10_pDNR-R[interact with..]	Contig3441 Contig2628 Contig3799 Contig2219 EICPS021_F07_pDNR-F EICPM046_A09_pDNR-F Contig3088 EICPS016_B11_pDNR-F Contig4310

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig3441	991	ref	XP_002511644.1	ccr4-not transcription complex, putative	Ricinus communis	2330	391 bits (1005)	e-107	198/271 (73%)	224/271 (82%)	+3
Contig2628	888	gb	ACF06538.1	adenine phosphoribosyltransferase 1	Elaeis guineensis	181	280 bits (715)	2e-73	138/165 (83%)	156/165 (94%), Gaps = 1/165 (0%)	+2
Contig3799	1277	ref	XP_002327413.1	predicted protein	Populus trichocarpa	307	359 bits (922)	e-100	171/222 (77%)	203/222 (91%)	+3
Contig2219	1198	ref	XP_002509910.1	vacuolar ATP synthase subunit E, putative	Ricinus communis	230	367 bits (942)	1e-99	183/227 (80%)	207/227 (91%)	+2
EICPS021_F07_pDNR-F	883	ref	NP_001043767.1	Os01g0659200	Oryza sativa (japonica cultivar-group)	230	286 bits (733)	1e-75	142/181 (78%)	164/181 (90%)	+1
EICPM046_A09_pDNR-F	983	ref	XP_002514179.1	Charged multivesicular body protein 4b, putative	Ricinus communis	218	227 bits (579)	1e-57	117/149 (78%)	125/149 (83%)	+2
Contig3088	1135	ref	XP_002320580.1	predicted protein	Populus trichocarpa	401	382 bits (982)	e-104	213/294 (72%)	237/294 (80%), Gaps = 11/294 (3%)	+3
EICPS016_B11_pDNR-F	811	ref	NP_001151790.1	calcineurin subunit B	Zea mays	175	291 bits (744)	7e-77	144/175 (82%)	162/175 (92%)	+3
Contig4310	1357	gb	ABN08957.1	H+-transporting two-sector ATPase, C (AC39) subunit	Medicago truncatula	351	669 bits (1727)	0.0	327/350 (93%)	339/350 (96%)	+1