Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	Contig3833	1262

Contig Map:

(ProjectName=FEICP SequenceName=Contig3833):
EICPM026-F09_pDNR-R:
EICPM026_F09_pDNR-F:

Sequences View:[Contig3833](Contig Seguence)

1262 bases 
GGCCCCTTTTTTTTATATCGAGGCTTGCGGGGATTCGGCCATTACGGCCGGGGACGCCCGACATCGAGTACCAGCAAACCGATCGCCTGCATTCCTACTCTCTTCCCCGAAATCCCCTCGCATGTGCCTCCCCACCATCTCTCTGGTTTCGTCCATGACCATCGCCTTCGTCACCGAAGCCTCGCGATGCAGTCGTAATTGAAGCTAGCTGGGAACGCAACCACGGGATCACGGCTTACAGAGACCCGAAACTCCATTTTTTTCCTCCTCTCCTACCCGGAAACATTAAGGAAGTGAACCTACCACACTCAGCAAAGACTAAAGATCAAAGATGTCCCGCCGATATGACAGCCGGACGACGATCTTCTCCCCGGAGGGACGACTCTACCAGGTGGAATACGCCATGGAAGCCATCGGCAACGCCGGCTCGGCGATCGGTATACTTGGTACCGACGGCGTAGTCCTTGTTGGAGAGAAGAAGGTCACCTCTAAGCTTCTCCAGACCTCCAAATCTACCGAGAAAATGTATAAGATTGACGATCATCTGGCATGTGCAGTCGCCGGTATCATGTCTGACGCCAACATCCTGATCAACACCGCGCGCGTTCAGGCCCAGCGCTACACTTTCGCATACCAGGAGCCCATGCCAGTTGAACAGCTCGTGCAGTCCCTTTGTGACACCAAGCAGGGTTACACCCAGTTTGGCGGGCTCCGCCCTTTCGGGGTCTCCTTCCTCTTCGCTGGCTGGGACTCCAACTTCGGCTTTCAGCTCTATATGAGTGATCCCAGTGGGAATTACAGTGGTTGGAAGGCCGCTGCCATTGGGGCCAACAACCAGGCTGCACAGTCCATGCTGAAGCAGGACTATAAGGAGGATATTGGTAGAGAGGAGGCAATCCAGCTTGCGCTCAAGGTGCTTAGCAAGACTATGGATAGTACCAGTCTTACAGCGGAGAAGCTTGAGCTAGCGGAGATTTTCTTGCTTCCTTCAGGAGAGGTGAAGTACCAGGTTTGTTCTCCAGAAGGGCTCACCAAGCTGCTCGTGAAATCTGGAGTCACCCAGCAACCTTCGGAGTCTGCTTAGCATGGGAGTTGGAGTCTTTAGCAAACTGCAAGGAAACACAAGGGTAGGGTGATCATAATATTGAATTTTATTGTTATCCAACCATTTTGTGAGCTATGTTTGCCTGTTGAAGAAACAAGGAAGATTTTATTTCTCACTATTTAGTTTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequences View:[Contig3833](Singleton Sequence)

Contig3833 1262  bases 
GGCCCCTTTTTTTTATATCGAGGCTTGCGGGGATTCGGCCATTACGGCCGGGGACGCCCGACATCGAGTACCAGCAAACCGATCGCCTGCATTCCTACTCTCTTCCCCGAAATCCCCTCGCATGTGCCTCCCCACCATCTCTCTGGTTTCGTCCATGACCATCGCCTTCGTCACCGAAGCCTCGCGATGCAGTCGTAATTGAAGCTAGCTGGGAACGCAACCACGGGATCACGGCTTACAGAGACCCGAAACTCCATTTTTTTCCTCCTCTCCTACCCGGAAACATTAAGGAAGTGAACCTACCACACTCAGCAAAGACTAAAGATCAAAGATGTCCCGCCGATATGACAGCCGGACGACGATCTTCTCCCCGGAGGGACGACTCTACCAGGTGGAATACGCCATGGAAGCCATCGGCAACGCCGGCTCGGCGATCGGTATACTTGGTACCGACGGCGTAGTCCTTGTTGGAGAGAAGAAGGTCACCTCTAAGCTTCTCCAGACCTCCAAATCTACCGAGAAAATGTATAAGATTGACGATCATCTGGCATGTGCAGTCGCCGGTATCATGTCTGACGCCAACATCCTGATCAACACCGCGCGCGTTCAGGCCCAGCGCTACACTTTCGCATACCAGGAGCCCATGCCAGTTGAACAGCTCGTGCAGTCCCTTTGTGACACCAAGCAGGGTTACACCCAGTTTGGCGGGCTCCGCCCTTTCGGGGTCTCCTTCCTCTTCGCTGGCTGGGACTCCAACTTCGGCTTTCAGCTCTATATGAGTGATCCCAGTGGGAATTACAGTGGTTGGAAGGCCGCTGCCATTGGGGCCAACAACCAGGCTGCACAGTCCATGCTGAAGCAGGACTATAAGGAGGATATTGGTAGAGAGGAGGCAATCCAGCTTGCGCTCAAGGTGCTTAGCAAGACTATGGATAGTACCAGTCTTACAGCGGAGAAGCTTGAGCTAGCGGAGATTTTCTTGCTTCCTTCAGGAGAGGTGAAGTACCAGGTTTGTTCTCCAGAAGGGCTCACCAAGCTGCTCGTGAAATCTGGAGTCACCCAGCAACCTTCGGAGTCTGCTTAGCATGGGAGTTGGAGTCTTTAGCAAACTGCAAGGAAACACAAGGGTAGGGTGATCATAATATTGAATTTTATTGTTATCCAACCATTTTGTGAGCTATGTTTGCCTGTTGAAGAAACAAGGAAGATTTTATTTCTCACTATTTAGTTTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002511119.1	proteasome subunit alpha type, putative	Ricinus communis	250	427 bits (1098)	e-117	213/250 (85%)	228/250 (91%)	+2

KEGG Pathway	GO
Contig3833[1 Pathway]	Contig3833[14 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	03050	Proteasome	[PATH:ath03050]	Contig3833	AT3G22110	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G22110	AT3G22110	vacuole	GO:0005773	other cytoplasmic components
AT3G22110	AT3G22110	vacuole	GO:0005773	other intracellular components
AT3G22110	AT3G22110	response to cadmium ion	GO:0046686	other biological processes
AT3G22110	AT3G22110	cytosolic ribosome	GO:0022626	cytosol
AT3G22110	AT3G22110	cytosolic ribosome	GO:0022626	ribosome
AT3G22110	AT3G22110	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT3G22110	AT3G22110	cytosolic ribosome	GO:0022626	other intracellular components
AT3G22110	AT3G22110	proteasome core complex	GO:0005839	other intracellular components
AT3G22110	AT3G22110	proteasome core complex	GO:0005839	other intracellular components
AT3G22110	AT3G22110	peptidase activity	GO:0008233	hydrolase activity
AT3G22110	AT3G22110	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT3G22110	AT3G22110	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT3G22110	AT3G22110	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT3G22110	AT3G22110	proteasome complex	GO:0000502	other intracellular components

Gene Network Informations
Gene Network	Interact with..
Contig3833[interact with..]	EICPS039_G05_pDNR-F Contig3799 EICPM044_E08_pDNR-F EICPS048_E11_pDNR-F Contig3015 EICPM006-C11_pDNR-R EICPM033-G07_pDNR-R EICPM055_G07_pDNR-F Contig2405 EICPM056-H01_pDNR-R EICPS054_B10_pDNR-F Contig3208 Contig3407 EICPS006_E08_PDNR-F EICPS026_D01_pDNR-F EICPS026_D02_pDNR-F Contig2997 EICPM019_A12_pDNR-F Contig2953 EICPM018-F05_pDNR-R Contig3833 Contig2538 Contig3506 Contig4500

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
EICPS039_G05_pDNR-F	634	ref	XP_002285871.1	PREDICTED: similar to PBC1 (20S proteasome beta subunit C1); peptidase isoform 1	Vitis vinifera	204	259 bits (661)	2e-67	124/134 (92%)	132/134 (98%)	+3
Contig3799	1277	ref	XP_002327413.1	predicted protein	Populus trichocarpa	307	359 bits (922)	e-100	171/222 (77%)	203/222 (91%)	+3
EICPM044_E08_pDNR-F	1048	gb	ABI48954.1	putative protein translation factor Sui1	Viola baoshanensis	113	57.8 bits (138)	6e-16	30/53 (56%)	38/53 (71%)	+3
EICPS048_E11_pDNR-F	739	gb	ACF06581.1	translational initiation factor eIF1	Elaeis guineensis	113	170 bits (430)	2e-40	87/113 (76%)	95/113 (84%)	+2
Contig3015	1090	ref	XP_002324245.1	predicted protein	Populus trichocarpa	244	375 bits (962)	e-102	171/243 (70%)	207/243 (85%)	+2
EICPM006-C11_pDNR-R	1007	ref	XP_002284989.1	PREDICTED: hypothetical protein isoform 1	Vitis vinifera	245	315 bits (808)	4e-84	152/225 (67%)	177/225 (78%)	+2
EICPM033-G07_pDNR-R	1055	ref	XP_002324245.1	predicted protein	Populus trichocarpa	244	339 bits (869)	3e-91	158/238 (66%)	189/238 (79%)	+2
EICPM055_G07_pDNR-F	1016	ref	XP_002304347.1	predicted protein	Populus trichocarpa	861	469 bits (1206)	e-130	233/314 (74%)	264/314 (84%), Gaps = 3/314 (0%)	+2
Contig2405	1041	ref	XP_002441353.1	hypothetical protein SORBIDRAFT_09g025080	Sorghum bicolor	267	396 bits (1018)	e-108	197/265 (74%)	221/265 (83%), Gaps = 7/265 (2%)	+3
EICPM056-H01_pDNR-R	1030	ref	XP_002441353.1	hypothetical protein SORBIDRAFT_09g025080	Sorghum bicolor	267	256 bits (654)	3e-66	129/180 (71%)	147/180 (81%), Gaps = 3/180 (1%)	+2
EICPS054_B10_pDNR-F	901	ref	NP_001044390.1	Os01g0772200	Oryza sativa (japonica cultivar-group)	117	72.8 bits (177)	5e-11	32/35 (91%)	33/35 (94%)	+1
Contig3208	835	emb	CBI32005.1	unnamed protein product	Vitis vinifera	191	322 bits (824)	4e-86	153/153 (100%)	153/153 (100%)	+1
Contig3407	841	emb	CBI32005.1	unnamed protein product	Vitis vinifera	191	320 bits (821)	8e-86	153/160 (95%)	154/160 (96%)	+1
EICPS006_E08_PDNR-F	554	emb	CBI32005.1	unnamed protein product	Vitis vinifera	191	190 bits (483)	5e-47	91/93 (97%)	91/93 (97%)	+1
EICPS026_D01_pDNR-F	817	gb	ACN50179.1	ubiquitin carrier-like protein	Annona cherimola	152	308 bits (790)	3e-82	145/152 (95%)	148/152 (97%)	+1
EICPS026_D02_pDNR-F	871	gb	ACN50179.1	ubiquitin carrier-like protein	Annona cherimola	152	308 bits (790)	3e-82	145/152 (95%)	148/152 (97%)	+3
Contig2997	907	ref	XP_002523728.1	superoxide dismutase [cu-zn], putative	Ricinus communis	213	291 bits (746)	5e-77	138/158 (87%)	150/158 (94%)	+3
EICPM019_A12_pDNR-F	1059	gb	ACC93637.1	chloroplast Cu/Zn superoxide dismutase	Gossypium hirsutum	214	275 bits (702)	8e-72	127/144 (88%)	139/144 (96%)	+3
Contig2953	1126	gb	ACJ38537.1	ascorbate peroxidase	Oncidium Gower Ramsey	249	441 bits (1135)	e-122	212/248 (85%)	225/248 (90%)	+1
EICPM018-F05_pDNR-R	996	gb	ACO57439.1	cytosolic ascorbate peroxidase	Elaeis oleifera	249	206 bits (524)	3e-51	113/231 (48%)	132/231 (57%), Gaps = 1/231 (0%)	+1
Contig3833	1262	ref	XP_002511119.1	proteasome subunit alpha type, putative	Ricinus communis	250	427 bits (1098)	e-117	213/250 (85%)	228/250 (91%)	+2
Contig2538	854	ref	XP_002517100.1	proteasome subunit beta type, putative	Ricinus communis	202	352 bits (902)	3e-95	169/196 (86%)	187/196 (95%)	+1
Contig3506	1041	emb	CBI19721.1	unnamed protein product	Vitis vinifera	260	211 bits (536)	1e-52	100/116 (86%)	108/116 (93%)	+3
Contig4500	1212	ref	XP_002510414.1	proteasome subunit alpha type, putative	Ricinus communis	283	405 bits (1040)	e-111	196/227 (86%)	213/227 (93%)	+1