Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	Contig3576	1184

Contig Map:

(ProjectName=FEICP SequenceName=Contig3576):
EICPM003-E10_pDNR-F:
EICPS015_B02_pDNR-F:
EICPM003-E10_pDNR-R:

Sequences View:[Contig3576](Contig Seguence)

1184 bases 
ACTATCTTCGTCATATGTGAGGGATTCGGCCATTACGGCCGGGGGGTTCAGACTGTAGGGTGCCTCTACCCCTCTCGCAAGAAAGCTTTATCGAATTGCATCGTATTTTGGACTTCAGAGACATCCTCATTCCGCGCTTCGTCTTCTTCAGATCGGATGGCGAAAGCTTTGTTAGATGGTCCCCCGAAGGGTGGGTTTAGTTTTGATATGTGCCGGAGGAACGATATGCTCGTGAAGAAGGGAATACAGCTCCCGGGTTTCAGGAAGACCGGAACCACCATTGTTGGCTTAGTTTTTGAGGATGGGGTTATTCTAGGAGCTGATACGAGAGCAACAGAAGGACCTATAGTTGCAGATAAGAATTGTGAGAAGATTCATTACATGGCACCAAACATCTATTGCTGTGGAGCTGGAACTGCTGCAGACACTGAGGCCGTGACAGACATGGTAAGCTCTCAGTTGCAGCTACACCGCTATGCGACTGGGCGTGAATCAAGGGTTGTCACTGCTCTTACCCTTTTGAAGTCACACTTGTTTAGCTACCAAGGTTATGTTAGTGCTGCATTGGTCCTTGGCGGTGTTGATGTGACCGGACCGCATTTGCATACAGTCTATCCACATGGTTCGACTGATACTCTCCCATTCGCTACGATGGGTTCGGGTTCTTTAGCTGCAATGGCTGTTTTTGAATCGAAGTACAAAGAAGGTTTGACTAGGGAGGATGGAATAAAACTTGTTTGTGAGGCCATATGCTCTGGTATCTTCAATGATTTGGGAAGCGGAAGCAATGTTGATGTTTGTGTGATAACTAAGGGCAAAACAGATTATTTGAGGAACCACCAGTTACCAAATCCTCGGACATATATTAGTTCTAGAGGCTACTCTTTCGCTAAGGGCCATACTGAGGTTTTGTCAACAAAGATCATTCCGCCGAAACCAAAAGTGGAGGTAGTTGCTGAGGTTGATGCCATGGAAGAAGAGTAAGGCAGATTATTTTGCATCTGCTGCTGCTGCTTGGCTTTGTTTTTAGCTTAATCAATGCATCAAATTGTGCCAACGAGATCTTTCCTTCGAATATTTATTTCTCTTGAATTCTCTTTTGTTTCGTGTTATGCTTATCTTTTATCCCACAGAGTCAATACTGAAAATTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequences View:[Contig3576](Singleton Sequence)

Contig3576 1184  bases 
ACTATCTTCGTCATATGTGAGGGATTCGGCCATTACGGCCGGGGGGTTCAGACTGTAGGGTGCCTCTACCCCTCTCGCAAGAAAGCTTTATCGAATTGCATCGTATTTTGGACTTCAGAGACATCCTCATTCCGCGCTTCGTCTTCTTCAGATCGGATGGCGAAAGCTTTGTTAGATGGTCCCCCGAAGGGTGGGTTTAGTTTTGATATGTGCCGGAGGAACGATATGCTCGTGAAGAAGGGAATACAGCTCCCGGGTTTCAGGAAGACCGGAACCACCATTGTTGGCTTAGTTTTTGAGGATGGGGTTATTCTAGGAGCTGATACGAGAGCAACAGAAGGACCTATAGTTGCAGATAAGAATTGTGAGAAGATTCATTACATGGCACCAAACATCTATTGCTGTGGAGCTGGAACTGCTGCAGACACTGAGGCCGTGACAGACATGGTAAGCTCTCAGTTGCAGCTACACCGCTATGCGACTGGGCGTGAATCAAGGGTTGTCACTGCTCTTACCCTTTTGAAGTCACACTTGTTTAGCTACCAAGGTTATGTTAGTGCTGCATTGGTCCTTGGCGGTGTTGATGTGACCGGACCGCATTTGCATACAGTCTATCCACATGGTTCGACTGATACTCTCCCATTCGCTACGATGGGTTCGGGTTCTTTAGCTGCAATGGCTGTTTTTGAATCGAAGTACAAAGAAGGTTTGACTAGGGAGGATGGAATAAAACTTGTTTGTGAGGCCATATGCTCTGGTATCTTCAATGATTTGGGAAGCGGAAGCAATGTTGATGTTTGTGTGATAACTAAGGGCAAAACAGATTATTTGAGGAACCACCAGTTACCAAATCCTCGGACATATATTAGTTCTAGAGGCTACTCTTTCGCTAAGGGCCATACTGAGGTTTTGTCAACAAAGATCATTCCGCCGAAACCAAAAGTGGAGGTAGTTGCTGAGGTTGATGCCATGGAAGAAGAGTAAGGCAGATTATTTTGCATCTGCTGCTGCTGCTTGGCTTTGTTTTTAGCTTAATCAATGCATCAAATTGTGCCAACGAGATCTTTCCTTCGAATATTTATTTCTCTTGAATTCTCTTTTGTTTCGTGTTATGCTTATCTTTTATCCCACAGAGTCAATACTGAAAATTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ACG40493.1	proteasome subunit beta type 7-A precursor	Zea mays	273	463 bits (1192)	e-128	222/249 (89%)	240/249 (96%)	+1

KEGG Pathway	GO
Contig3576[1 Pathway]	Contig3576[7 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	03050	Proteasome	[PATH:ath03050]	Contig3576	AT5G40580	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G40580	AT5G40580	proteasome core complex	GO:0005839	other intracellular components
AT5G40580	AT5G40580	proteasome core complex	GO:0005839	other intracellular components
AT5G40580	AT5G40580	peptidase activity	GO:0008233	hydrolase activity
AT5G40580	AT5G40580	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT5G40580	AT5G40580	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT5G40580	AT5G40580	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT5G40580	AT5G40580	proteasome complex	GO:0000502	other intracellular components

Gene Network Informations
Gene Network	Interact with..
Contig3576[interact with..]	EICPS039_G05_pDNR-F Contig3015 EICPM006-C11_pDNR-R EICPM033-G07_pDNR-R Contig2599 EICPM038_F05_pDNR-F EICPS043_E03_pDNR-F Contig2822 EICPM018-B01_pDNR-R Contig3833 Contig3420 EICPM013_D05_pDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
EICPS039_G05_pDNR-F	634	ref	XP_002285871.1	PREDICTED: similar to PBC1 (20S proteasome beta subunit C1); peptidase isoform 1	Vitis vinifera	204	259 bits (661)	2e-67	124/134 (92%)	132/134 (98%)	+3
Contig3015	1090	ref	XP_002324245.1	predicted protein	Populus trichocarpa	244	375 bits (962)	e-102	171/243 (70%)	207/243 (85%)	+2
EICPM006-C11_pDNR-R	1007	ref	XP_002284989.1	PREDICTED: hypothetical protein isoform 1	Vitis vinifera	245	315 bits (808)	4e-84	152/225 (67%)	177/225 (78%)	+2
EICPM033-G07_pDNR-R	1055	ref	XP_002324245.1	predicted protein	Populus trichocarpa	244	339 bits (869)	3e-91	158/238 (66%)	189/238 (79%)	+2
Contig2599	1085	ref	XP_002513374.1	proteasome subunit alpha type, putative	Ricinus communis	235	426 bits (1095)	e-117	217/235 (92%)	225/235 (95%)	+3
EICPM038_F05_pDNR-F	1034	ref	XP_002278126.1	PREDICTED: hypothetical protein	Vitis vinifera	235	402 bits (1032)	e-112	204/220 (92%)	212/220 (96%)	+3
EICPS043_E03_pDNR-F	747	ref	XP_002513374.1	proteasome subunit alpha type, putative	Ricinus communis	235	291 bits (745)	5e-77	145/159 (91%)	152/159 (95%)	+1
Contig2822	1047	emb	CAC43323.1	putative alpha7 proteasome subunit	Nicotiana tabacum	249	435 bits (1119)	e-120	212/228 (92%)	221/228 (96%)	+2
EICPM018-B01_pDNR-R	851	ref	NP_001055904.1	Os05g0490800	Oryza sativa (japonica cultivar-group)	276	79.0 bits (193)	6e-23	53/133 (39%)	70/133 (52%), Gaps = 27/133 (20%)	+3
Contig3833	1262	ref	XP_002511119.1	proteasome subunit alpha type, putative	Ricinus communis	250	427 bits (1098)	e-117	213/250 (85%)	228/250 (91%)	+2
Contig3420	1002	ref	XP_002527995.1	proteasome subunit beta type 6,9, putative	Ricinus communis	231	394 bits (1012)	e-108	198/231 (85%)	211/231 (91%)	+1
EICPM013_D05_pDNR-F	1101	emb	CAA72741.1	RAD23, isoform I	Daucus carota	382	241 bits (615)	1e-61	145/293 (49%)	172/293 (58%), Gaps = 3/293 (1%)	+3