Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	EICPM038_F05_pDNR-F	1034

Contig Map:

(ProjectName=FEICP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[EICPM038_F05_pDNR-F](Singleton Sequence)

EICPM038_F05_pDNR-F 1034  bases 
GGAGTAATTTTTCCTCGCAAACACTGTCTTGCGTGAGGGTTCACTTTCCCGATCGCCTTGGAAGAAGCTGCCTGGTGGCACAGCAGTTCCCGGATTTCTCTCAGATCGGTGACCGGACGATGGGCGATAGTCAGTACTCTTTCTCTCTCACCACCTTCAGTCCTTCAGGGAAGCTCGTACAGATAGAGCACGCTCTAATGGCTGTCGGATCCGGGCAGACCTCTCTTGGGATCAAAGCCGCAAATGGTGTTGTTATTGCAACCGAGAAGAAGCTGCCTTCGATTTTAGTGGATGAAACATCTGTCCAGAAGATTCGACTTATGACGCCTAACATTGGCGTTGTCTATAGTGGAATGGGTCCAGATTCCCGTGTATTAGTTAGAAAAAGTCGAAAGCAAGCACAACAGTATTTCAGACTCTACAAAGAGGCAATTCCAGTCACACAACTAGTCAGGGAAACGGCTACCGTAATGCAGGAATTCACTTAGTCTGGTGGCGTAAGGCCTTTTGGTGTTTCTTTGCTAGTTGCTGGATTTGATGACAGTGGTCCGCAGCTTTATCAGGTTGATCCTTCTGGATCATACTTTTCATGGAAAGCTTCTGCTATGGGTAAAAATGTTTCAAATGCAAAGACATTCCTTGAGAAGAGGTACACTGAGGATATGGAGCTTGATGATACTGTTCATACTGCTATCTTGACCTTGAATGAAGGTTTTGAAGGCCAAATTTCACGCAAAAATATTGAAATTGGGTTAATTGGCACTGACCGGAAGTTCAGGTGTTGAGCGCAGCTGAGATTGATGATTACTTGGCTGAAGTGGAGTAAATCTCTGCTCTTTTGCTGAAGATCTGATCTAATAACTAAGAAAAATGAATTGAATTTTTCTCTGATTAGTGACATCATCTACGATGTATGTGTACTAGCTATCTATTTCCATAAACATTTCTATCTCATTATCGATAGAGGACTGCTAGTGCATTGTTTGACCCCTTTTTTTTGCATTTCTGAGTGATGAAGATGCCATTTATTTGAT

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002278126.1	PREDICTED: hypothetical protein	Vitis vinifera	235	402 bits (1032)	e-112	204/220 (92%)	212/220 (96%)	+3

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[11 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	03050	Proteasome	[PATH:ath03050]	EICPM038_F05_pDNR-F	AT1G79210	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G79210	AT1G79210	defense response to bacterium	GO:0042742	response to stress
AT1G79210	AT1G79210	defense response to bacterium	GO:0042742	response to abiotic or biotic stimulus
AT1G79210	AT1G79210	proteasome core complex	GO:0005839	other intracellular components
AT1G79210	AT1G79210	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT1G79210	AT1G79210	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT1G79210	AT1G79210	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT1G79210	AT1G79210	proteasome complex	GO:0000502	other intracellular components
AT1G79210	AT1G79210	defense response to bacterium	GO:0042742	response to stress
AT1G79210	AT1G79210	defense response to bacterium	GO:0042742	response to abiotic or biotic stimulus
AT1G79210	AT1G79210	defense response to bacterium	GO:0042742	response to stress
AT1G79210	AT1G79210	defense response to bacterium	GO:0042742	response to abiotic or biotic stimulus

Gene Network Informations
Gene Network	Interact with..
EICPM038_F05_pDNR-F[interact with..]	Contig4355 Contig2822 EICPM018-B01_pDNR-R Contig3292 Contig3729 Contig3833 Contig3420 Contig3506 Contig4500

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig4355	1036	sp	Q9XG77.1	PSA6_TOBAC RecName: Full=Proteasome subunit alpha type-6; AltName: Full=20S proteasome alpha subunit A; AltName: Full=20S proteasome		246	461 bits (1186)	e-128	224/246 (91%)	243/246 (98%)	+1
Contig2822	1047	emb	CAC43323.1	putative alpha7 proteasome subunit	Nicotiana tabacum	249	435 bits (1119)	e-120	212/228 (92%)	221/228 (96%)	+2
EICPM018-B01_pDNR-R	851	ref	NP_001055904.1	Os05g0490800	Oryza sativa (japonica cultivar-group)	276	79.0 bits (193)	6e-23	53/133 (39%)	70/133 (52%), Gaps = 27/133 (20%)	+3
Contig3292	1177	emb	CBI35797.1	unnamed protein product	Vitis vinifera	293	447 bits (1150)	e-123	225/238 (94%)	234/238 (98%)	+1
Contig3729	1055	emb	CBI35797.1	unnamed protein product	Vitis vinifera	293	451 bits (1159)	e-125	224/238 (94%)	235/238 (98%)	+2
Contig3833	1262	ref	XP_002511119.1	proteasome subunit alpha type, putative	Ricinus communis	250	427 bits (1098)	e-117	213/250 (85%)	228/250 (91%)	+2
Contig3420	1002	ref	XP_002527995.1	proteasome subunit beta type 6,9, putative	Ricinus communis	231	394 bits (1012)	e-108	198/231 (85%)	211/231 (91%)	+1
Contig3506	1041	emb	CBI19721.1	unnamed protein product	Vitis vinifera	260	211 bits (536)	1e-52	100/116 (86%)	108/116 (93%)	+3
Contig4500	1212	ref	XP_002510414.1	proteasome subunit alpha type, putative	Ricinus communis	283	405 bits (1040)	e-111	196/227 (86%)	213/227 (93%)	+1