Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	Contig4355	1036

Contig Map:

(ProjectName=FEICP SequenceName=Contig4355):
EICPM006-E1_pDNR-F:
EICPM006-E1_pDNR-R:

Sequences View:[Contig4355](Contig Seguence)

1036 bases 
TTATCGTACTCATATATGAGGATTCGGCCATTACGGCCGGGGAGCACAATGAGCCGTGGAACTGGTGCCGGATACGATCGCCACATCACCATCTTCTCCCCTGAGGGCCGCCTCTACCAAGTCGAGTATGCGTTCAAAGCGGTCAAGGCTGCTGGCGTCACGTCCATCGGGGTGAGAGGGAGGGATTCAATCTGCGTGGTTACACAGAAGAAGGTTCCGGATAAATTGTTGGACCAAACCAGCATCACTCATCTCTTTCCTATCACCAAGTACCTTGGTTTGCTAGCCACGGGGATTACAGCTGATGCAAGGTCTCTTGTTCAGCAAGCAAGGAATGAAGCAGCGGAATTTCGCTTCAAATGGGGATATGAGATGCCTGTTGATGTGCTTGCCAAGTGGATAGCTGACAAATCACAGATATATACACAGCATGCTTACATGCGACCACTTGGAGTAGTTGCAATGATATTGGGCATTGATGAAGAAAAAGGACCTCAGCTATTCAAGTGTGACCCTGCTGGTCATTTTTTTGGCCACAAGGCAACAAGTGCTGGATTGAAGGAGCAAGAGGCAATCAACTTTCTGGAGAAGAAAATGAAGAATGATCCTTCATTCTCATATGAGGAGACTGTGCAGACTGCAATATCTGCCCTGCAATCAGTTCTACAGGAGGACTTCAAGGCAACAGAGATCGAGGTGGGAATTGTGAGAAAGGATGATCCTATTTTTAAAGTGCTATCTGTAGAGGAGATTGACGAGCATCTTACCGCCATCAGCGAGCGAGACTGAACTGAAATTTTCATCAAAATTATATATTACAGTTTCTGCAAATACGACTTGGGGACTTAAATCATAAAAAGTCTGTATTTGAATACAATTTTACATTTCACCCCCACCCCCCCAATCACAGTATTTGTAGTTTTTTATCACAAGAGTTCTCAGGACCTGTTAATTGTACCGTCACGTTTCTTATGATTCACCTTAATTGCTGCTTGCATTTGTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequences View:[Contig4355](Singleton Sequence)

Contig4355 1036  bases 
TTATCGTACTCATATATGAGGATTCGGCCATTACGGCCGGGGAGCACAATGAGCCGTGGAACTGGTGCCGGATACGATCGCCACATCACCATCTTCTCCCCTGAGGGCCGCCTCTACCAAGTCGAGTATGCGTTCAAAGCGGTCAAGGCTGCTGGCGTCACGTCCATCGGGGTGAGAGGGAGGGATTCAATCTGCGTGGTTACACAGAAGAAGGTTCCGGATAAATTGTTGGACCAAACCAGCATCACTCATCTCTTTCCTATCACCAAGTACCTTGGTTTGCTAGCCACGGGGATTACAGCTGATGCAAGGTCTCTTGTTCAGCAAGCAAGGAATGAAGCAGCGGAATTTCGCTTCAAATGGGGATATGAGATGCCTGTTGATGTGCTTGCCAAGTGGATAGCTGACAAATCACAGATATATACACAGCATGCTTACATGCGACCACTTGGAGTAGTTGCAATGATATTGGGCATTGATGAAGAAAAAGGACCTCAGCTATTCAAGTGTGACCCTGCTGGTCATTTTTTTGGCCACAAGGCAACAAGTGCTGGATTGAAGGAGCAAGAGGCAATCAACTTTCTGGAGAAGAAAATGAAGAATGATCCTTCATTCTCATATGAGGAGACTGTGCAGACTGCAATATCTGCCCTGCAATCAGTTCTACAGGAGGACTTCAAGGCAACAGAGATCGAGGTGGGAATTGTGAGAAAGGATGATCCTATTTTTAAAGTGCTATCTGTAGAGGAGATTGACGAGCATCTTACCGCCATCAGCGAGCGAGACTGAACTGAAATTTTCATCAAAATTATATATTACAGTTTCTGCAAATACGACTTGGGGACTTAAATCATAAAAAGTCTGTATTTGAATACAATTTTACATTTCACCCCCACCCCCCCAATCACAGTATTTGTAGTTTTTTATCACAAGAGTTCTCAGGACCTGTTAATTGTACCGTCACGTTTCTTATGATTCACCTTAATTGCTGCTTGCATTTGTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
sp	Q9XG77.1	PSA6_TOBAC RecName: Full=Proteasome subunit alpha type-6; AltName: Full=20S proteasome alpha subunit A; AltName: Full=20S proteasome		246	461 bits (1186)	e-128	224/246 (91%)	243/246 (98%)	+1

KEGG Pathway	GO
Contig4355[1 Pathway]	Contig4355[15 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	03050	Proteasome	[PATH:ath03050]	Contig4355	AT2G05840	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT2G05840	AT2G05840	cytosolic ribosome	GO:0022626	cytosol
AT2G05840	AT2G05840	cytosolic ribosome	GO:0022626	ribosome
AT2G05840	AT2G05840	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT2G05840	AT2G05840	cytosolic ribosome	GO:0022626	other intracellular components
AT2G05840	AT2G05840	proteasome core complex	GO:0005839	other intracellular components
AT2G05840	AT2G05840	proteasome core complex	GO:0005839	other intracellular components
AT2G05840	AT2G05840	peptidase activity	GO:0008233	hydrolase activity
AT2G05840	AT2G05840	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT2G05840	AT2G05840	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT2G05840	AT2G05840	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT2G05840	AT2G05840	proteasome complex	GO:0000502	other intracellular components
AT2G05840	AT2G05840	cytosolic ribosome	GO:0022626	cytosol
AT2G05840	AT2G05840	cytosolic ribosome	GO:0022626	ribosome
AT2G05840	AT2G05840	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT2G05840	AT2G05840	cytosolic ribosome	GO:0022626	other intracellular components

Gene Network Informations
Gene Network	Interact with..
Contig4355[interact with..]	EICPS039_G05_pDNR-F Contig3015 EICPM006-C11_pDNR-R EICPM033-G07_pDNR-R EICPM042_E09_pDNR-F Contig2822 EICPM018-B01_pDNR-R Contig3292 Contig3729 Contig3833 Contig3506 Contig4500

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
EICPS039_G05_pDNR-F	634	ref	XP_002285871.1	PREDICTED: similar to PBC1 (20S proteasome beta subunit C1); peptidase isoform 1	Vitis vinifera	204	259 bits (661)	2e-67	124/134 (92%)	132/134 (98%)	+3
Contig3015	1090	ref	XP_002324245.1	predicted protein	Populus trichocarpa	244	375 bits (962)	e-102	171/243 (70%)	207/243 (85%)	+2
EICPM006-C11_pDNR-R	1007	ref	XP_002284989.1	PREDICTED: hypothetical protein isoform 1	Vitis vinifera	245	315 bits (808)	4e-84	152/225 (67%)	177/225 (78%)	+2
EICPM033-G07_pDNR-R	1055	ref	XP_002324245.1	predicted protein	Populus trichocarpa	244	339 bits (869)	3e-91	158/238 (66%)	189/238 (79%)	+2
EICPM042_E09_pDNR-F	1005	ref	XP_002307666.1	predicted protein	Populus trichocarpa	374	448 bits (1152)	e-127	217/249 (87%)	233/249 (93%)	+3
Contig2822	1047	emb	CAC43323.1	putative alpha7 proteasome subunit	Nicotiana tabacum	249	435 bits (1119)	e-120	212/228 (92%)	221/228 (96%)	+2
EICPM018-B01_pDNR-R	851	ref	NP_001055904.1	Os05g0490800	Oryza sativa (japonica cultivar-group)	276	79.0 bits (193)	6e-23	53/133 (39%)	70/133 (52%), Gaps = 27/133 (20%)	+3
Contig3292	1177	emb	CBI35797.1	unnamed protein product	Vitis vinifera	293	447 bits (1150)	e-123	225/238 (94%)	234/238 (98%)	+1
Contig3729	1055	emb	CBI35797.1	unnamed protein product	Vitis vinifera	293	451 bits (1159)	e-125	224/238 (94%)	235/238 (98%)	+2
Contig3833	1262	ref	XP_002511119.1	proteasome subunit alpha type, putative	Ricinus communis	250	427 bits (1098)	e-117	213/250 (85%)	228/250 (91%)	+2
Contig3506	1041	emb	CBI19721.1	unnamed protein product	Vitis vinifera	260	211 bits (536)	1e-52	100/116 (86%)	108/116 (93%)	+3
Contig4500	1212	ref	XP_002510414.1	proteasome subunit alpha type, putative	Ricinus communis	283	405 bits (1040)	e-111	196/227 (86%)	213/227 (93%)	+1