Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	EICPM018-F05_pDNR-R	996

Contig Map:

(ProjectName=FEICP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[EICPM018-F05_pDNR-R](Singleton Sequence)

EICPM018-F05_pDNR-R 996  bases 
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTAAAAACCTACAACCTAATATGGATTTATTTATTAAATTAACAAAAAAAAGGCTTGAAGGTGGATTCTGGGAACCAACCGACCATATTGTTTAAATGACATGATATACTGATATCCCTAACAAAAGAAGACACGAAAATCCTCCATAGTACACATAAAACTTTAAAACAACTGCACTTCTGTCAGGACATTCAAACTTCAACAAATCCAAGCTCTGAAAGCTTTAGGGGGGCCTGAGCATAATCAGCAAAGAAAGCATCCTCATCTGCAGCATATTTATCTACAAAAGGGCAAAAAGGCGAAAAGCTCAGAAGGGCCTAGGGGGATGGCAGGTGGATGAGTGCTTCATTCTTTCCTTTAATAAGCTCGGAGAATTAAGAAATGACAAAGATAAACGGATTAGACGTCCAAACCCCTTAAAAACCTGAACGCTCCTTATGGCATTTTGCCATCGTGTGTCCACCAGAAAAACCAACAATGCCCTGATCACTCAACCCCTTGTGACCGAGAACTCCCCTCAGGTGATCAGAACCTTAGAACCCTTCAGGGAAACAAGCTTACTAACGGGGTTCAGGGTTATCCTCCCTTCCGGCATGGAAGGGAGCCTGGGGTCCACCAGTGCCTTCAACAGCAACAACTCCACCACGCTGGTAGACGTGGGCATACGAAAGGACCAGAAGCTGCGCCTCGATCGGTTGCAGCAATCCCACAGCGATACTAAGGCCGTAGTGCCCCTCGTGTGCCCGCTCATCCGCGTGCCTTATCGCCCCTAACGGCCCTACCGTCCTCCTCTTGACATCGTACGTTCCAACCGAGTGCCCAACCAGTAGAGAATGAGCGGATGACAGGTCTCTGGCTATGAAGCCTCGGAGCTTCTTACCACACTCCGAACCGTTTACCGTGTTAATGGTCCCTCTCATCTTACTTCACCACTGCTCGCTATTGGGAGGTGGAGCGAGGTCCGA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ACO57439.1	cytosolic ascorbate peroxidase	Elaeis oleifera	249	206 bits (524)	3e-51	113/231 (48%)	132/231 (57%), Gaps = 1/231 (0%)	+1

KEGG Pathway	GO
NoContigFind[2 Pathway]	NoContigFind[10 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Carbohydrate Metabolism	00053	Ascorbate and aldarate metabolism	[PATH:ath00053]	EICPM018-F05_pDNR-R	AT3G09640	FEICP
Metabolism	Metabolism of Other Amino Acids	00480	Glutathione metabolism	[PATH:ath00480]	EICPM018-F05_pDNR-R	AT3G09640	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G09640	AT3G09640	cytoplasm	GO:0005737	other cytoplasmic components
AT3G09640	AT3G09640	cytosol	GO:0005829	cytosol
AT3G09640	AT3G09640	L-ascorbate peroxidase activity	GO:0016688	other enzyme activity
AT3G09640	AT3G09640	L-ascorbate peroxidase activity	GO:0016688	other enzyme activity
AT3G09640	AT3G09640	response to oxidative stress	GO:0006979	response to stress
AT3G09640	AT3G09640	cytoplasm	GO:0005737	other cytoplasmic components
AT3G09640	AT3G09640	cytosol	GO:0005829	cytosol
AT3G09640	AT3G09640	L-ascorbate peroxidase activity	GO:0016688	other enzyme activity
AT3G09640	AT3G09640	L-ascorbate peroxidase activity	GO:0016688	other enzyme activity
AT3G09640	AT3G09640	response to oxidative stress	GO:0006979	response to stress

Gene Network Informations
Gene Network	Interact with..
EICPM018-F05_pDNR-R[interact with..]	Contig3110 Contig3693 Contig2953 EICPM018-F05_pDNR-R

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig3110	1030	gb	ACU16597.1	unknown	Glycine max	212	279 bits (714)	3e-73	145/189 (76%)	150/189 (79%)	+2
Contig3693	1035	ref	XP_002523967.1	50S ribosomal protein L3, putative	Ricinus communis	285	353 bits (907)	1e-95	187/289 (64%)	210/289 (72%)	+3
Contig2953	1126	gb	ACJ38537.1	ascorbate peroxidase	Oncidium Gower Ramsey	249	441 bits (1135)	e-122	212/248 (85%)	225/248 (90%)	+1
EICPM018-F05_pDNR-R	996	gb	ACO57439.1	cytosolic ascorbate peroxidase	Elaeis oleifera	249	206 bits (524)	3e-51	113/231 (48%)	132/231 (57%), Gaps = 1/231 (0%)	+1