Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	EICPS039_G05_pDNR-F	634

Contig Map:

(ProjectName=FEICP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[EICPS039_G05_pDNR-F](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002285871.1	PREDICTED: similar to PBC1 (20S proteasome beta subunit C1); peptidase isoform 1	Vitis vinifera	204	259 bits (661)	2e-67	124/134 (92%)	132/134 (98%)	+3

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[8 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	03050	Proteasome	[PATH:ath03050]	EICPS039_G05_pDNR-F	AT1G21720	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G21720	AT1G21720	plasma membrane	GO:0005886	plasma membrane
AT1G21720	AT1G21720	proteasome core complex	GO:0005839	other intracellular components
AT1G21720	AT1G21720	proteasome core complex	GO:0005839	other intracellular components
AT1G21720	AT1G21720	peptidase activity	GO:0008233	hydrolase activity
AT1G21720	AT1G21720	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT1G21720	AT1G21720	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT1G21720	AT1G21720	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT1G21720	AT1G21720	proteasome complex	GO:0000502	other intracellular components

Gene Network Informations
Gene Network	Interact with..
EICPS039_G05_pDNR-F[interact with..]	Contig2599 EICPM038_F05_pDNR-F EICPS043_E03_pDNR-F Contig2822 EICPM018-B01_pDNR-R Contig2538 Contig3167 EICPM050-G02_pDNR-R Contig3420

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig2599	1085	ref	XP_002513374.1	proteasome subunit alpha type, putative	Ricinus communis	235	426 bits (1095)	e-117	217/235 (92%)	225/235 (95%)	+3
EICPM038_F05_pDNR-F	1034	ref	XP_002278126.1	PREDICTED: hypothetical protein	Vitis vinifera	235	402 bits (1032)	e-112	204/220 (92%)	212/220 (96%)	+3
EICPS043_E03_pDNR-F	747	ref	XP_002513374.1	proteasome subunit alpha type, putative	Ricinus communis	235	291 bits (745)	5e-77	145/159 (91%)	152/159 (95%)	+1
Contig2822	1047	emb	CAC43323.1	putative alpha7 proteasome subunit	Nicotiana tabacum	249	435 bits (1119)	e-120	212/228 (92%)	221/228 (96%)	+2
EICPM018-B01_pDNR-R	851	ref	NP_001055904.1	Os05g0490800	Oryza sativa (japonica cultivar-group)	276	79.0 bits (193)	6e-23	53/133 (39%)	70/133 (52%), Gaps = 27/133 (20%)	+3
Contig2538	854	ref	XP_002517100.1	proteasome subunit beta type, putative	Ricinus communis	202	352 bits (902)	3e-95	169/196 (86%)	187/196 (95%)	+1
Contig3167	1041	gb	ACG27794.1	proteasome subunit beta type 1	Zea mays	221	393 bits (1010)	e-107	187/221 (84%)	206/221 (93%)	+2
EICPM050-G02_pDNR-R	1077	gb	ABK21828.1	unknown	Picea sitchensis	229	284 bits (727)	2e-91	133/160 (83%)	151/160 (94%)	+2
Contig3420	1002	ref	XP_002527995.1	proteasome subunit beta type 6,9, putative	Ricinus communis	231	394 bits (1012)	e-108	198/231 (85%)	211/231 (91%)	+1