Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	EICPS026_D02_pDNR-F	871

Contig Map:

(ProjectName=FEICP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[EICPS026_D02_pDNR-F](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ACN50179.1	ubiquitin carrier-like protein	Annona cherimola	152	308 bits (790)	3e-82	145/152 (95%)	148/152 (97%)	+3

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[15 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	04120	Ubiquitin mediated proteolysis	[PATH:ath04120]	EICPS026_D02_pDNR-F	AT2G02760	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT2G02760	AT2G02760	ubiquitin-protein ligase activity	GO:0004842	other enzyme activity
AT2G02760	AT2G02760	ubiquitin-protein ligase activity	GO:0004842	other enzyme activity
AT2G02760	AT2G02760	ubiquitin-protein ligase activity	GO:0004842	other enzyme activity
AT2G02760	AT2G02760	UV protection	GO:0009650	response to abiotic or biotic stimulus
AT2G02760	AT2G02760	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT2G02760	AT2G02760	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT2G02760	AT2G02760	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT2G02760	AT2G02760	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT2G02760	AT2G02760	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT2G02760	AT2G02760	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT2G02760	AT2G02760	vegetative to reproductive phase transition of meristem	GO:0010228	developmental processes
AT2G02760	AT2G02760	histone H2B ubiquitination	GO:0033523	protein metabolism
AT2G02760	AT2G02760	histone H2B ubiquitination	GO:0033523	other cellular processes
AT2G02760	AT2G02760	histone H2B ubiquitination	GO:0033523	other metabolic processes
AT2G02760	AT2G02760	histone H2B ubiquitination	GO:0033523	cell organization and biogenesis

Gene Network Informations
Gene Network	Interact with..
EICPS026_D02_pDNR-F[interact with..]	EICPS015_A04_pDNR-F Contig4547 EICPM031_H07_pDNR-F Contig3208 Contig3407 EICPS006_E08_PDNR-F EICPS026_D01_pDNR-F EICPS026_D02_pDNR-F Contig3410 EICPS030_F08_pDNR-F EICPS038_F02_pDNR-F Contig4478 Contig2079 EICPS055_E06_pDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
EICPS015_A04_pDNR-F	1056	ref	XP_002321254.1	predicted protein	Populus trichocarpa	1152	436 bits (1122)	e-123	215/288 (74%)	250/288 (86%), Gaps = 2/288 (0%)	+3
Contig4547	1185	ref	XP_002304234.1	predicted protein	Populus trichocarpa	218	396 bits (1018)	e-108	190/218 (87%)	207/218 (94%)	+1
EICPM031_H07_pDNR-F	1033	gb	ABH07428.1	vacuolar H+-ATPase subunit C	Gossypium hirsutum	377	414 bits (1063)	e-113	204/260 (78%)	227/260 (87%), Gaps = 2/260 (0%)	+3
Contig3208	835	emb	CBI32005.1	unnamed protein product	Vitis vinifera	191	322 bits (824)	4e-86	153/153 (100%)	153/153 (100%)	+1
Contig3407	841	emb	CBI32005.1	unnamed protein product	Vitis vinifera	191	320 bits (821)	8e-86	153/160 (95%)	154/160 (96%)	+1
EICPS006_E08_PDNR-F	554	emb	CBI32005.1	unnamed protein product	Vitis vinifera	191	190 bits (483)	5e-47	91/93 (97%)	91/93 (97%)	+1
EICPS026_D01_pDNR-F	817	gb	ACN50179.1	ubiquitin carrier-like protein	Annona cherimola	152	308 bits (790)	3e-82	145/152 (95%)	148/152 (97%)	+1
EICPS026_D02_pDNR-F	871	gb	ACN50179.1	ubiquitin carrier-like protein	Annona cherimola	152	308 bits (790)	3e-82	145/152 (95%)	148/152 (97%)	+3
Contig3410	926	gb	ACF06534.1	ubiquitin-conjugating enzyme	Elaeis guineensis	148	271 bits (694)	5e-71	127/148 (85%)	130/148 (87%)	+2
EICPS030_F08_pDNR-F	880	gb	ACF06534.1	ubiquitin-conjugating enzyme	Elaeis guineensis	148	268 bits (686)	4e-70	126/148 (85%)	129/148 (87%)	+2
EICPS038_F02_pDNR-F	980	gb	ACF06534.1	ubiquitin-conjugating enzyme	Elaeis guineensis	148	271 bits (694)	6e-71	127/148 (85%)	130/148 (87%)	+2
Contig4478	1051	ref	NP_001055755.1	Os05g0460200	Oryza sativa (japonica cultivar-group)	169	267 bits (682)	2e-69	122/147 (82%)	130/147 (88%)	+1
Contig2079	707	gb	ACF06574.1	ubiquitin-conjugating enzyme	Elaeis guineensis	160	290 bits (743)	6e-77	137/160 (85%)	141/160 (88%)	+3
EICPS055_E06_pDNR-F	901	gb	ACF06574.1	ubiquitin-conjugating enzyme	Elaeis guineensis	160	319 bits (818)	2e-85	144/160 (90%)	153/160 (95%)	+2