Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	Contig2405	1041

Contig Map:

(ProjectName=FEICP SequenceName=Contig2405):
EICPM056_H01_pDNR-F:
EICPM051_D09_pDNR-F:
EICPM019_B12_pDNR-F:
EICPM056-H01_pDNR-R:

Sequences View:[Contig2405](Contig Seguence)

1041 bases 
AAGGTGCCCAGATGTCTATGGGAGAGGACGGAAGGAATGTCCTGGAGACGGGGAGAGCGGACCGCTCGGTGTGGCTAATGAAGTGCCCGACTCTGGTATCGAAGTCGTGGCAGTCCACTGCTGCGCTGTCGTCGTCGGATTCCGGCATTCCTAACCCTATCGTCGCCAAGGTCGTGCTCTCCCTCGACCCCGTCCACAACGATGAGCCCAACGCGCTCCAGTTCAAGATGGAGTTGGCTCAGAAAGATGGTGTCAATACACCCAAGAGCTATTCCTTAAACATGTTCAAAGATTTTGTTCCCATGTGTGTTTTCTCAGAATCAAGTCAAGGAAAATGTGCATTGGAAGGGAAGGTTGAGCATAAATTTGACATGGAACCTCATAGTGAAAACTTTGGGGAATATGGCAAACTTTGCCGTGAAAGGACAAGCAAAGCTATGATAAAAACCAGACAAATTCAGATAATTGACAAGGATCATGGTGTTCTTATGAGGCCCATGCCTGGTATGGTTGGCTTGGTTCCATCTGGTTCAAAGGATAAGAAGAAGGTTGCACCAGTGAAGGGATCTGATGTTAAACGAACGAGAAGGGACCGTAGAGAACTTGAAAATATCATCTTTAAGCTTTTTGAAAGGCAGCCAAACTGGGCGTTGAAGCAACTGGTTCTGGAAACAGACCAACCCGAGCAATTCCTCAAAGAAATACTAAATGATCTCTGCGTATACAACAAACGTGGACCGAACCAAGGAACCCATGAGCTCAAGCCGGAATACAAGAAATCAGCCGAGGATGAAATGCAACAGAACTGAGCACAATACCATGGTTGTTGATTTCAGTAGCTGTGATCTGTAGTTAAAAATCCTTTTAGAGGTGTGTTAGTTAATGCTGAGAACGCGATAGCTTGGAAAAAATTTATCAATACTTCTTCACCAAAGGATTGGCGGAAAATTCTATATGGATATATCTATTTGGTCATATACTGATGAGCGACATTTACTTTGTGTGGGTATTGGTGGGTGGCCAACAATGTTGCAGCTACTG

Sequences View:[Contig2405](Singleton Sequence)

Contig2405 1041  bases 
AAGGTGCCCAGATGTCTATGGGAGAGGACGGAAGGAATGTCCTGGAGACGGGGAGAGCGGACCGCTCGGTGTGGCTAATGAAGTGCCCGACTCTGGTATCGAAGTCGTGGCAGTCCACTGCTGCGCTGTCGTCGTCGGATTCCGGCATTCCTAACCCTATCGTCGCCAAGGTCGTGCTCTCCCTCGACCCCGTCCACAACGATGAGCCCAACGCGCTCCAGTTCAAGATGGAGTTGGCTCAGAAAGATGGTGTCAATACACCCAAGAGCTATTCCTTAAACATGTTCAAAGATTTTGTTCCCATGTGTGTTTTCTCAGAATCAAGTCAAGGAAAATGTGCATTGGAAGGGAAGGTTGAGCATAAATTTGACATGGAACCTCATAGTGAAAACTTTGGGGAATATGGCAAACTTTGCCGTGAAAGGACAAGCAAAGCTATGATAAAAACCAGACAAATTCAGATAATTGACAAGGATCATGGTGTTCTTATGAGGCCCATGCCTGGTATGGTTGGCTTGGTTCCATCTGGTTCAAAGGATAAGAAGAAGGTTGCACCAGTGAAGGGATCTGATGTTAAACGAACGAGAAGGGACCGTAGAGAACTTGAAAATATCATCTTTAAGCTTTTTGAAAGGCAGCCAAACTGGGCGTTGAAGCAACTGGTTCTGGAAACAGACCAACCCGAGCAATTCCTCAAAGAAATACTAAATGATCTCTGCGTATACAACAAACGTGGACCGAACCAAGGAACCCATGAGCTCAAGCCGGAATACAAGAAATCAGCCGAGGATGAAATGCAACAGAACTGAGCACAATACCATGGTTGTTGATTTCAGTAGCTGTGATCTGTAGTTAAAAATCCTTTTAGAGGTGTGTTAGTTAATGCTGAGAACGCGATAGCTTGGAAAAAATTTATCAATACTTCTTCACCAAAGGATTGGCGGAAAATTCTATATGGATATATCTATTTGGTCATATACTGATGAGCGACATTTACTTTGTGTGGGTATTGGTGGGTGGCCAACAATGTTGCAGCTACTG

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002441353.1	hypothetical protein SORBIDRAFT_09g025080	Sorghum bicolor	267	396 bits (1018)	e-108	197/265 (74%)	221/265 (83%), Gaps = 7/265 (2%)	+3

KEGG Pathway	GO
Contig2405[1 Pathway]	Contig2405[19 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Transcription	03022	Basal transcription factors	[PATH:ath03022]	Contig2405	AT1G75510	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G75510	AT1G75510	mitochondrion	GO:0005739	mitochondria
AT1G75510	AT1G75510	transcription factor TFIIF complex	GO:0005674	nucleus
AT1G75510	AT1G75510	transcription factor TFIIF complex	GO:0005674	other intracellular components
AT1G75510	AT1G75510	RNA polymerase II transcription factor activity	GO:0003702	other molecular functions
AT1G75510	AT1G75510	transcription initiation from RNA polymerase II promoter	GO:0006367	transcription
AT1G75510	AT1G75510	transcription initiation from RNA polymerase II promoter	GO:0006367	other cellular processes
AT1G75510	AT1G75510	transcription initiation from RNA polymerase II promoter	GO:0006367	other metabolic processes
AT1G75510	AT1G75510	ATP binding	GO:0005524	nucleotide binding
AT1G75510	AT1G75510	ATP-dependent helicase activity	GO:0008026	hydrolase activity
AT1G75510	AT1G75510	ATP-dependent helicase activity	GO:0008026	other enzyme activity
AT1G75510	AT1G75510	RNA polymerase II transcription factor activity	GO:0003702	other molecular functions
AT1G75510	AT1G75510	catalytic activity	GO:0003824	other enzyme activity
AT1G75510	AT1G75510	general RNA polymerase II transcription factor activity	GO:0016251	other molecular functions
AT1G75510	AT1G75510	transcription from RNA polymerase II promoter	GO:0006366	transcription
AT1G75510	AT1G75510	transcription from RNA polymerase II promoter	GO:0006366	other cellular processes
AT1G75510	AT1G75510	transcription from RNA polymerase II promoter	GO:0006366	other metabolic processes
AT1G75510	AT1G75510	transcription initiation from RNA polymerase II promoter	GO:0006367	transcription
AT1G75510	AT1G75510	transcription initiation from RNA polymerase II promoter	GO:0006367	other cellular processes
AT1G75510	AT1G75510	transcription initiation from RNA polymerase II promoter	GO:0006367	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
Contig2405[interact with..]	EICPM024_A09_pDNR-F Contig4547 Contig2405 EICPM056-H01_pDNR-R EICPS054_B10_pDNR-F EICPM008_G08_pDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
EICPM024_A09_pDNR-F	931	emb	CBI16283.1	unnamed protein product	Vitis vinifera	494	313 bits (801)	2e-83	145/206 (70%)	163/206 (79%)	+1
Contig4547	1185	ref	XP_002304234.1	predicted protein	Populus trichocarpa	218	396 bits (1018)	e-108	190/218 (87%)	207/218 (94%)	+1
Contig2405	1041	ref	XP_002441353.1	hypothetical protein SORBIDRAFT_09g025080	Sorghum bicolor	267	396 bits (1018)	e-108	197/265 (74%)	221/265 (83%), Gaps = 7/265 (2%)	+3
EICPM056-H01_pDNR-R	1030	ref	XP_002441353.1	hypothetical protein SORBIDRAFT_09g025080	Sorghum bicolor	267	256 bits (654)	3e-66	129/180 (71%)	147/180 (81%), Gaps = 3/180 (1%)	+2
EICPS054_B10_pDNR-F	901	ref	NP_001044390.1	Os01g0772200	Oryza sativa (japonica cultivar-group)	117	72.8 bits (177)	5e-11	32/35 (91%)	33/35 (94%)	+1
EICPM008_G08_pDNR-F	912	emb	CBI33123.1	unnamed protein product	Vitis vinifera	539	150 bits (379)	2e-34	90/165 (54%)	102/165 (61%), Gaps = 6/165 (3%)	+3