Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	EICPM044_E08_pDNR-F	1048

Contig Map:

(ProjectName=FEICP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[EICPM044_E08_pDNR-F](Singleton Sequence)

EICPM044_E08_pDNR-F 1048  bases 
GGATACGAAGGACCTCGACACCTACCACTGATTCTAGAGGAATTTGAGAAAGCGATTGGAGTTTCTCTCTTGCTCCCTGTAATTTATAATGGTTACTTGGAAATCATCACTCCTGTTTGCTCTTCTTGATTTCTCTTGATTTGGATTAAAATATTTTGTGGTTTGGTAGCTCTTGTGATGGATATTATTTGGTCTGGTGCTTCTCATCTATACTTCAAAAAAAAAGGTCTATGTCTGATCTTTGGGCCCAGATTCCTACTAGCTTTGATCCATTTGCTGAGGCTAATGCTGATAAAGCTGGTGCATGACTAGTGCTTGGATTCTCCATTCGTGTTCCGCCCGGTAATGGGAGGAAGAGCCTGACAACTGTGCATGGACTGAAGAAAGAATTACTGAATCTATCAATCTGAGTCCACCTGAGCTCGAATTTTGCTGCAATGGTACCCTGCCGGAGGACCCTGACTGTGGACAGGCATTTCACCTCCTGGTGATCGGAGGAAAAATGTGTCCACCTTCCTAATCCTGAACGGTATACGGAATCAAGACCTTGTCACCATGCATGGATTCTGAGCACCTGGAGGATTGTGGGTTCATTACGTGGTTCATAATGACGACTTTTACTACTTATGCTGGAAAACTTGACCTTTTAATGCCTGATACTATATGCATATTCTCTGCAACCCACTGCTACCTTTAATTTCGTCTGCATCACTTCTATGTGTCCTCTTGGTGAGACTTGTGTGTCATCTGCCTTAGATGACCATGTGCTTCACTCATGAATTAGTATGTTCTCTTCTTTGCTCATGTCCTGTGTCTCATAAGGGTGAACACTATCACATATCACCAGCTCGTCGTCTGTCATCGCACTCGAGATGCTTGATAACCTTTCTCATGCGGCGCAGAATGTGAATGAAGGCGACTAGATCTTGTGCTGTTTTCTTCTTAAATGCTCGTTAAAGACGACGTATTGTCTTCTGAACAGTACTAGATACACGTACGTTAACCAGCGACTGAAAACTCAAATGGTCTTTAAAGGCTACGGAATATC

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ABI48954.1	putative protein translation factor Sui1	Viola baoshanensis	113	57.8 bits (138)	6e-16	30/53 (56%)	38/53 (71%)	+3

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[14 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Translation	03013	RNA transport	[PATH:ath03013]	EICPM044_E08_pDNR-F	AT1G54290	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G54290	AT1G54290	translation initiation factor activity	GO:0003743	nucleic acid binding
AT1G54290	AT1G54290	translation	GO:0006412	protein metabolism
AT1G54290	AT1G54290	translation	GO:0006412	other cellular processes
AT1G54290	AT1G54290	translation	GO:0006412	other metabolic processes
AT1G54290	AT1G54290	translational initiation	GO:0006413	protein metabolism
AT1G54290	AT1G54290	translational initiation	GO:0006413	other cellular processes
AT1G54290	AT1G54290	translational initiation	GO:0006413	other metabolic processes
AT1G54290	AT1G54290	translational initiation	GO:0006413	cell organization and biogenesis
AT1G54290	AT1G54290	cellular_component	GO:0005575	unknown cellular components
AT1G54290	AT1G54290	translation initiation factor activity	GO:0003743	nucleic acid binding
AT1G54290	AT1G54290	translational initiation	GO:0006413	protein metabolism
AT1G54290	AT1G54290	translational initiation	GO:0006413	other cellular processes
AT1G54290	AT1G54290	translational initiation	GO:0006413	other metabolic processes
AT1G54290	AT1G54290	translational initiation	GO:0006413	cell organization and biogenesis

Gene Network Informations
Gene Network	Interact with..
EICPM044_E08_pDNR-F[interact with..]	EICPM015_A07_pDNR-F EICPM020_B02_pDNR-F Contig4406 Contig4510 EICPM044_E08_pDNR-F EICPS048_E11_pDNR-F EICPS056_D04_pDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
EICPM015_A07_pDNR-F	1073	dbj	BAF25507.2	Os09g0503400	Oryza sativa Japonica Group	1095	427 bits (1098)	e-124	210/309 (67%)	243/309 (78%)	+3
EICPM020_B02_pDNR-F	968	emb	CAH66534.1	H0209H04.1	Oryza sativa (indica cultivar-group)	679	151 bits (381)	1e-34	71/87 (81%)	80/87 (91%)	+1
Contig4406	1317	ref	XP_002305183.1	predicted protein	Populus trichocarpa	452	391 bits (1005)	e-107	213/356 (59%)	240/356 (67%), Gaps = 9/356 (2%)	+3
Contig4510	1550	emb	CBI26461.1	unnamed protein product	Vitis vinifera	960	530 bits (1365)	e-148	267/407 (65%)	323/407 (79%), Gaps = 1/407 (0%)	+2
EICPM044_E08_pDNR-F	1048	gb	ABI48954.1	putative protein translation factor Sui1	Viola baoshanensis	113	57.8 bits (138)	6e-16	30/53 (56%)	38/53 (71%)	+3
EICPS048_E11_pDNR-F	739	gb	ACF06581.1	translational initiation factor eIF1	Elaeis guineensis	113	170 bits (430)	2e-40	87/113 (76%)	95/113 (84%)	+2
EICPS056_D04_pDNR-F	589	ref	XP_002305183.1	predicted protein	Populus trichocarpa	452	126 bits (317)	1e-27	62/101 (61%)	73/101 (72%), Gaps = 1/101 (0%)	+3