Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	EICPS-D4_pDNR-F	936

Contig Map:

(ProjectName=FEICP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[EICPS-D4_pDNR-F](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
sp	Q42877.1	RPB2_SOLLC RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA polymerase II subunit B2; Short=RNA polymerase II subunit		1191	414 bits (1063)	e-114	198/208 (95%)	205/208 (98%)	+3

KEGG Pathway	GO
NoContigFind[3 Pathway]	NoContigFind[32 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Transcription	03020	RNA polymerase	[PATH:ath03020]	EICPS-D4_pDNR-F	AT4G21710	FEICP
Metabolism	Nucleotide Metabolism	00230	Purine metabolism	[PATH:ath00230]	EICPS-D4_pDNR-F	AT4G21710	FEICP
Metabolism	Nucleotide Metabolism	00240	Pyrimidine metabolism	[PATH:ath00240]	EICPS-D4_pDNR-F	AT4G21710	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	other intracellular components
AT4G21710	AT4G21710	DNA binding	GO:0003677	DNA or RNA binding
AT4G21710	AT4G21710	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT4G21710	AT4G21710	transcription	GO:0006350	transcription
AT4G21710	AT4G21710	embryo development ending in seed dormancy	GO:0009793	developmental processes
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	other intracellular components
AT4G21710	AT4G21710	DNA binding	GO:0003677	DNA or RNA binding
AT4G21710	AT4G21710	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT4G21710	AT4G21710	transcription	GO:0006350	transcription
AT4G21710	AT4G21710	embryo development ending in seed dormancy	GO:0009793	developmental processes
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	other intracellular components
AT4G21710	AT4G21710	DNA binding	GO:0003677	DNA or RNA binding
AT4G21710	AT4G21710	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT4G21710	AT4G21710	transcription	GO:0006350	transcription
AT4G21710	AT4G21710	embryo development ending in seed dormancy	GO:0009793	developmental processes
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	nucleus
AT4G21710	AT4G21710	"DNA-directed RNA polymerase II, holoenzyme"	GO:0016591	other intracellular components
AT4G21710	AT4G21710	DNA binding	GO:0003677	DNA or RNA binding
AT4G21710	AT4G21710	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT4G21710	AT4G21710	transcription	GO:0006350	transcription
AT4G21710	AT4G21710	embryo development ending in seed dormancy	GO:0009793	developmental processes

Gene Network Informations
Gene Network	Interact with..
EICPS-D4_pDNR-F[interact with..]	Contig2405 EICPM056-H01_pDNR-R EICPS054_B10_pDNR-F EICPS052_C09_pDNR-F Contig2784 EICPM039_A05_pDNR-F EICPS010_F02_pDNR-F EICPS021_E01_pDNR-F EICPS033_B01_pDNR-F EICPS042_G12_pDNR-F Contig3092 EICPM032_D01_pDNR-F EICPS017_B01_pDNR-F EICPS045_G06_pDNR-F Contig3435 EICPM008_G08_pDNR-F Contig3023 EICPM051-G03_pDNR-R Contig2603

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig2405	1041	ref	XP_002441353.1	hypothetical protein SORBIDRAFT_09g025080	Sorghum bicolor	267	396 bits (1018)	e-108	197/265 (74%)	221/265 (83%), Gaps = 7/265 (2%)	+3
EICPM056-H01_pDNR-R	1030	ref	XP_002441353.1	hypothetical protein SORBIDRAFT_09g025080	Sorghum bicolor	267	256 bits (654)	3e-66	129/180 (71%)	147/180 (81%), Gaps = 3/180 (1%)	+2
EICPS054_B10_pDNR-F	901	ref	NP_001044390.1	Os01g0772200	Oryza sativa (japonica cultivar-group)	117	72.8 bits (177)	5e-11	32/35 (91%)	33/35 (94%)	+1
EICPS052_C09_pDNR-F	743	ref	XP_002277485.1	PREDICTED: O-acetylserine(thiol)-lyase	Vitis vinifera	382	146 bits (368)	2e-33	74/96 (77%)	80/96 (83%)	+1
Contig2784	1512	ref	XP_002332589.1	predicted protein	Populus trichocarpa	648	730 bits (1884)	0.0	369/409 (90%)	378/409 (92%), Gaps = 1/409 (0%)	+2
EICPM039_A05_pDNR-F	1034	gb	ACJ11740.1	heat shock protein 70	Gossypium hirsutum	647	486 bits (1252)	e-139	248/263 (94%)	251/263 (95%)	+1
EICPS010_F02_pDNR-F	752	gb	AAF34134.1	high molecular weight heat shock protein	Malus x domestica	650	280 bits (715)	1e-73	143/169 (84%)	148/169 (87%), Gaps = 3/169 (1%)	+3
EICPS021_E01_pDNR-F	712	ref	XP_002332589.1	predicted protein	Populus trichocarpa	648	228 bits (582)	3e-58	112/124 (90%)	118/124 (95%), Gaps = 1/124 (0%)	+3
EICPS033_B01_pDNR-F	1050	ref	XP_002332589.1	predicted protein	Populus trichocarpa	648	282 bits (721)	3e-75	139/153 (90%)	147/153 (96%), Gaps = 1/153 (0%)	+2
EICPS042_G12_pDNR-F	768	gb	AAF34134.1	high molecular weight heat shock protein	Malus x domestica	650	289 bits (740)	2e-76	148/173 (85%)	152/173 (87%), Gaps = 3/173 (1%)	+2
Contig3092	1077	ref	NP_001043581.1	Os01g0616900	Oryza sativa (japonica cultivar-group)	605	387 bits (995)	e-106	187/270 (69%)	221/270 (81%), Gaps = 9/270 (3%)	+2
EICPM032_D01_pDNR-F	1111	ref	XP_002514371.1	ctp synthase, putative	Ricinus communis	602	384 bits (986)	e-140	183/245 (74%)	209/245 (85%)	+2
EICPS017_B01_pDNR-F	775	ref	NP_001043581.1	Os01g0616900	Oryza sativa (japonica cultivar-group)	605	245 bits (625)	4e-63	119/180 (66%)	139/180 (77%), Gaps = 9/180 (5%)	+1
EICPS045_G06_pDNR-F	1031	ref	NP_001043581.1	Os01g0616900	Oryza sativa (japonica cultivar-group)	605	95.5 bits (236)	8e-18	49/90 (54%)	61/90 (67%), Gaps = 5/90 (5%)	+3
Contig3435	1439	ref	XP_002302599.1	predicted protein	Populus trichocarpa	372	528 bits (1361)	e-148	252/286 (88%)	270/286 (94%)	+1
EICPM008_G08_pDNR-F	912	emb	CBI33123.1	unnamed protein product	Vitis vinifera	539	150 bits (379)	2e-34	90/165 (54%)	102/165 (61%), Gaps = 6/165 (3%)	+3
Contig3023	1341	dbj	BAA93051.1	cysteine synthase	Allium tuberosum	325	506 bits (1304)	e-141	259/325 (79%)	278/325 (85%)	+3
EICPM051-G03_pDNR-R	1068	dbj	BAA93051.1	cysteine synthase	Allium tuberosum	325	228 bits (580)	1e-61	123/189 (65%)	131/189 (69%)	+1
Contig2603	1062	ref	XP_002318240.1	predicted protein	Populus trichocarpa	143	204 bits (518)	2e-50	104/143 (72%)	111/143 (77%), Gaps = 1/143 (0%)	+2