Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	EICPM008_G08_pDNR-F	912

Contig Map:

(ProjectName=FEICP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[EICPM008_G08_pDNR-F](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
emb	CBI33123.1	unnamed protein product	Vitis vinifera	539	150 bits (379)	2e-34	90/165 (54%)	102/165 (61%), Gaps = 6/165 (3%)	+3

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[23 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Transcription	03022	Basal transcription factors	[PATH:ath03022]	EICPM008_G08_pDNR-F	AT4G12610	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT4G12610	AT4G12610	chloroplast	GO:0009507	chloroplast
AT4G12610	AT4G12610	DNA binding	GO:0003677	DNA or RNA binding
AT4G12610	AT4G12610	RNA polymerase II transcription factor activity	GO:0003702	other molecular functions
AT4G12610	AT4G12610	catalytic activity	GO:0003824	other enzyme activity
AT4G12610	AT4G12610	transcription activator activity	GO:0016563	other molecular functions
AT4G12610	AT4G12610	transcription initiation from RNA polymerase II promoter	GO:0006367	transcription
AT4G12610	AT4G12610	transcription initiation from RNA polymerase II promoter	GO:0006367	other cellular processes
AT4G12610	AT4G12610	transcription initiation from RNA polymerase II promoter	GO:0006367	other metabolic processes
AT4G12610	AT4G12610	positive regulation of transcription	GO:0045941	transcription
AT4G12610	AT4G12610	positive regulation of transcription	GO:0045941	other cellular processes
AT4G12610	AT4G12610	positive regulation of transcription	GO:0045941	other metabolic processes
AT4G12610	AT4G12610	nucleus	GO:0005634	nucleus
AT4G12610	AT4G12610	transcription initiation factor activity	GO:0016986	other molecular functions
AT4G12610	AT4G12610	DNA binding	GO:0003677	DNA or RNA binding
AT4G12610	AT4G12610	RNA polymerase II transcription factor activity	GO:0003702	other molecular functions
AT4G12610	AT4G12610	catalytic activity	GO:0003824	other enzyme activity
AT4G12610	AT4G12610	transcription activator activity	GO:0016563	other molecular functions
AT4G12610	AT4G12610	transcription initiation from RNA polymerase II promoter	GO:0006367	transcription
AT4G12610	AT4G12610	transcription initiation from RNA polymerase II promoter	GO:0006367	other cellular processes
AT4G12610	AT4G12610	transcription initiation from RNA polymerase II promoter	GO:0006367	other metabolic processes
AT4G12610	AT4G12610	positive regulation of transcription	GO:0045941	transcription
AT4G12610	AT4G12610	positive regulation of transcription	GO:0045941	other cellular processes
AT4G12610	AT4G12610	positive regulation of transcription	GO:0045941	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
EICPM008_G08_pDNR-F[interact with..]	EICPM004-A9_pDNR-R EICPM008_G08_pDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
EICPM004-A9_pDNR-R	997	ref	XP_002518700.1	DNA-directed RNA polymerase II subunit, putative	Ricinus communis	318	225 bits (573)	5e-59	119/172 (69%)	135/172 (78%)	+1
EICPM008_G08_pDNR-F	912	emb	CBI33123.1	unnamed protein product	Vitis vinifera	539	150 bits (379)	2e-34	90/165 (54%)	102/165 (61%), Gaps = 6/165 (3%)	+3