Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	EICPS045_G06_pDNR-F	1031

Contig Map:

(ProjectName=FEICP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[EICPS045_G06_pDNR-F](Singleton Sequence)

EICPS045_G06_pDNR-F 1031  bases 
CTTCTCATCCTTATTATGTTGGTGTCCACTTCCATCCAGAGTTCAAATCTAGACCTGGAAAACCCTCTGCTGTTTTTGTAGGTTTAATAGCTGCTTCCTGTGGGCAACTGGATGTGCACCTAAAATCTAAGGGAGACAACAATTTGCCTCACACAAAGCATAATACGACAAATGGTTTTCCTGCATAGGTTTGCCACAACGGACACGTGAAGAACTTGCCAAATGGAGCGTATTATGCAAACGGCAGTGGCGTGCACCCTTAATTCCATTCAACTGATCTCAGTAGTTTGGTTTTTAGGATTCATTATGTGGTTTCGTATATACACCATTTGATTGGTTTTAAAGTTTCAGTTCCAGGATATACCAACAGCTAATAGCCATTGCTGGCAATCGAGCTTGTTCCAGGGTTTTTTAGCAAGGGACGGCCAATTTTATTTTTGGCGCCCACAGATATTGATGTTGTGATACTACTTTTTTTTTTTTTTTAATGATAGTATTTTGAACTCTTCTTCCATTTTTATTTAATACTTGATGTTTTTTTTGTTTTTTTTCCCCTGGAAATTAAGTCTAATTGCCAAGTGATATGTAAGGATTGTAAGCTTCAATCTATATTGAACAAATTTAAAAAAAAACTGGTGACATGCCCCCCGCCTCGGGCCTCACGAACTTATATTCTCATTCATTTCGTGCGCGAACTCAGTAGGGAATTCACCGTGGTCTCCCTGTTTCCTAGGATATCTGGATAAGACTAGGGCTTGGATTCGACCACACACAAGAGCCGGAGGACACTGAACGTTGTTCACGAATACGATGGAGTCGGAGGACACTCTGGCATATTACAGGTCAGCCTCGCGAGTGCCATATCAAATTACGCACGACCTTGCACTCGTCGGCAACAGGTGTATTAGTCAGCATACTGTCGACCTGAATCCCTCTAAAGCGTTGAAGACCTGAATCGCAGCTGACCGGCCCTGTCGCTCTGTGATCACTTAGCGCATGGCGAACATGGGCCTAACAGTGCCTGTTTGTAC

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	NP_001043581.1	Os01g0616900	Oryza sativa (japonica cultivar-group)	605	95.5 bits (236)	8e-18	49/90 (54%)	61/90 (67%), Gaps = 5/90 (5%)	+3

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[12 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Nucleotide Metabolism	00240	Pyrimidine metabolism	[PATH:ath00240]	EICPS045_G06_pDNR-F	AT3G12670	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G12670	AT3G12670	CTP synthase activity	GO:0003883	other enzyme activity
AT3G12670	AT3G12670	embryo development ending in seed dormancy	GO:0009793	developmental processes
AT3G12670	AT3G12670	CTP synthase activity	GO:0003883	other enzyme activity
AT3G12670	AT3G12670	catalytic activity	GO:0003824	other enzyme activity
AT3G12670	AT3G12670	endomembrane system	GO:0012505	other cellular components
AT3G12670	AT3G12670	response to cadmium ion	GO:0046686	other biological processes
AT3G12670	AT3G12670	CTP synthase activity	GO:0003883	other enzyme activity
AT3G12670	AT3G12670	embryo development ending in seed dormancy	GO:0009793	developmental processes
AT3G12670	AT3G12670	CTP synthase activity	GO:0003883	other enzyme activity
AT3G12670	AT3G12670	catalytic activity	GO:0003824	other enzyme activity
AT3G12670	AT3G12670	endomembrane system	GO:0012505	other cellular components
AT3G12670	AT3G12670	response to cadmium ion	GO:0046686	other biological processes

Gene Network Informations
Gene Network	Interact with..
EICPS045_G06_pDNR-F[interact with..]	Contig3088 Contig3593 Contig1919 EICPS007_B09_pDNR-F EICPS050_C09_pDNR-F Contig3092 EICPM032_D01_pDNR-F EICPS017_B01_pDNR-F EICPS045_G06_pDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig3088	1135	ref	XP_002320580.1	predicted protein	Populus trichocarpa	401	382 bits (982)	e-104	213/294 (72%)	237/294 (80%), Gaps = 11/294 (3%)	+3
Contig3593	994	ref	XP_002531594.1	40S ribosomal protein S5, putative	Ricinus communis	211	359 bits (922)	2e-97	180/211 (85%)	195/211 (92%)	+3
Contig1919	1702	ref	NP_001049673.1	Os03g0268400	Oryza sativa (japonica cultivar-group)	361	658 bits (1698)	0.0	326/361 (90%)	346/361 (95%)	+1
EICPS007_B09_pDNR-F	638	ref	XP_002319515.1	predicted protein	Populus trichocarpa	423	228 bits (582)	2e-58	115/119 (96%)	117/119 (98%)	+1
EICPS050_C09_pDNR-F	693	gb	ACG32205.1	40S ribosomal protein S14	Zea mays	150	207 bits (527)	7e-52	107/124 (86%)	110/124 (88%)	+2
Contig3092	1077	ref	NP_001043581.1	Os01g0616900	Oryza sativa (japonica cultivar-group)	605	387 bits (995)	e-106	187/270 (69%)	221/270 (81%), Gaps = 9/270 (3%)	+2
EICPM032_D01_pDNR-F	1111	ref	XP_002514371.1	ctp synthase, putative	Ricinus communis	602	384 bits (986)	e-140	183/245 (74%)	209/245 (85%)	+2
EICPS017_B01_pDNR-F	775	ref	NP_001043581.1	Os01g0616900	Oryza sativa (japonica cultivar-group)	605	245 bits (625)	4e-63	119/180 (66%)	139/180 (77%), Gaps = 9/180 (5%)	+1
EICPS045_G06_pDNR-F	1031	ref	NP_001043581.1	Os01g0616900	Oryza sativa (japonica cultivar-group)	605	95.5 bits (236)	8e-18	49/90 (54%)	61/90 (67%), Gaps = 5/90 (5%)	+3