Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	Contig3435	1439

Contig Map:

(ProjectName=FEICP SequenceName=Contig3435):
EICPM003-A6_pDNR-F:
EICPS044_C12_pDNR-F:
EICPM003-A6_pDNR-R:

Sequences View:[Contig3435](Contig Seguence)

1439 bases 
ATATCGTACTTCATATATGAGGTATTCGGCCATTACGGCCGGGGAACCTTAAGAGAAATAAAGCTTCTACGACACATGGATCATGAAAATATTATTGCCATCAAGGACATCATCCGCCCTCCCCTAAGGGAAAACTTCAATGATGTATATATTGTTTATGAACTGATGGATACCGACCTTCAGCAGATAATTCGTTCTAATCAGCAATTGACAGATGATCATTGCCAGTATTTTCTTTATCAGATATTACGAGGATTAAAATATGTTCATTCTGCACATGTTTTACACCGTGACCTCAAGCCAAGCAATTTGCTCCTAAATGCGAACTGTGATCTTAAGATAGGAGATTTTGGCCTTGCCAGGACGACATCAGAAACCGATTTCATGACGGAGTACGTTGTTACTCGTTGGTATCGAGCACCTGAACTTCTACTAAATTGTTCAGAGTATACTGCTGCTATTGATATTTGGTCAGTGGGGTGCATACTTGGTGAGATTGTAACTCGAGAACCTCTATTTCCAGGCAGAGACTATGTTCATCAATTAAGGTTGATCACAGAGCTTATAGGCTCCCCAGATGACACAAGCCTGGGGTTTCTCCGAAGCGATAACGCCAGGAGATACGTAAAGCAGCTCCCTCGGTATCCAAGGCAAAGATTCAGTGCCAGATTCCCAAATACGTCCTATGGCGCTGTCGATTTACTGGAGAAAATGCTCGTTTTTGATCCGAGCCAGAGAATTACAGTTGATGATGCCCTACGCCACCCATATCTGGCATCTCTCCATGAAATAAATGAAGAGCCAGTGTGCCCTACCCCTTTCAACTTCGATTTCGAGCACCCATCACTCACAGAGGAGGACATCAAGGAGCTTATCTGGATGGAATCATTTAATTTCAATCCTGACCTAATGCGGTAGAATTTCGCTTGATCTATTGAGGGTAAAGGGTTCAGTATTTTTTGTTCTGGGGCTGGAATTGTGATATCATTAGCCTTCTAGATTGAATGGAAACAAGTTCTACAAATGATTTTATCTTTCTGAGAAGAGTATTTTATGTTTCTTTCTCCCTCTATCATCATATATTTTTTTTGGGGGGGAACCCAAGAGAGATTTGCCGCCCCCTTTGATTTGGAGAATAGGAAGGATAAACTTGTACCCCCGCGTAGTATAGGGGTAGCCCCCGCCCCTGTAATGTTTGTGAGGTGTTTTGTTTATGGAAAATAGACAATTTTATTTCTGTAATAAAATGCGCAAGGATATTGTGCTGTAATTTCATCTTTTTTTTCTGATTTTATGCTCACCCATGACAAATATTTAGATTTGCCCCATATAACAGTACTGTTAATAGAAGCCAAAATGAAAAATTGTCCCATTTGAGATAGTTGCAGAATTTTTTTATATGACTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequences View:[Contig3435](Singleton Sequence)

Contig3435 1439  bases 
ATATCGTACTTCATATATGAGGTATTCGGCCATTACGGCCGGGGAACCTTAAGAGAAATAAAGCTTCTACGACACATGGATCATGAAAATATTATTGCCATCAAGGACATCATCCGCCCTCCCCTAAGGGAAAACTTCAATGATGTATATATTGTTTATGAACTGATGGATACCGACCTTCAGCAGATAATTCGTTCTAATCAGCAATTGACAGATGATCATTGCCAGTATTTTCTTTATCAGATATTACGAGGATTAAAATATGTTCATTCTGCACATGTTTTACACCGTGACCTCAAGCCAAGCAATTTGCTCCTAAATGCGAACTGTGATCTTAAGATAGGAGATTTTGGCCTTGCCAGGACGACATCAGAAACCGATTTCATGACGGAGTACGTTGTTACTCGTTGGTATCGAGCACCTGAACTTCTACTAAATTGTTCAGAGTATACTGCTGCTATTGATATTTGGTCAGTGGGGTGCATACTTGGTGAGATTGTAACTCGAGAACCTCTATTTCCAGGCAGAGACTATGTTCATCAATTAAGGTTGATCACAGAGCTTATAGGCTCCCCAGATGACACAAGCCTGGGGTTTCTCCGAAGCGATAACGCCAGGAGATACGTAAAGCAGCTCCCTCGGTATCCAAGGCAAAGATTCAGTGCCAGATTCCCAAATACGTCCTATGGCGCTGTCGATTTACTGGAGAAAATGCTCGTTTTTGATCCGAGCCAGAGAATTACAGTTGATGATGCCCTACGCCACCCATATCTGGCATCTCTCCATGAAATAAATGAAGAGCCAGTGTGCCCTACCCCTTTCAACTTCGATTTCGAGCACCCATCACTCACAGAGGAGGACATCAAGGAGCTTATCTGGATGGAATCATTTAATTTCAATCCTGACCTAATGCGGTAGAATTTCGCTTGATCTATTGAGGGTAAAGGGTTCAGTATTTTTTGTTCTGGGGCTGGAATTGTGATATCATTAGCCTTCTAGATTGAATGGAAACAAGTTCTACAAATGATTTTATCTTTCTGAGAAGAGTATTTTATGTTTCTTTCTCCCTCTATCATCATATATTTTTTTTGGGGGGGAACCCAAGAGAGATTTGCCGCCCCCTTTGATTTGGAGAATAGGAAGGATAAACTTGTACCCCCGCGTAGTATAGGGGTAGCCCCCGCCCCTGTAATGTTTGTGAGGTGTTTTGTTTATGGAAAATAGACAATTTTATTTCTGTAATAAAATGCGCAAGGATATTGTGCTGTAATTTCATCTTTTTTTTCTGATTTTATGCTCACCCATGACAAATATTTAGATTTGCCCCATATAACAGTACTGTTAATAGAAGCCAAAATGAAAAATTGTCCCATTTGAGATAGTTGCAGAATTTTTTTATATGACTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002302599.1	predicted protein	Populus trichocarpa	372	528 bits (1361)	e-148	252/286 (88%)	270/286 (94%)	+1

KEGG Pathway	GO
Contig3435[2 Pathway]	Contig3435[72 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Organismal Systems	Environmental Adaptation	04626	Plant-pathogen interaction	[PATH:ath04626]	Contig3435	AT4G01370	FEICP
Organismal Systems	Immune System	04650	Natural killer cell mediated cytotoxicity	[PATH:ath04650]	Contig3435	AT4G01370	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT4G01370	AT4G01370	cytoplasm	GO:0005737	other cytoplasmic components
AT4G01370	AT4G01370	nucleus	GO:0005634	nucleus
AT4G01370	AT4G01370	nucleus	GO:0005634	nucleus
AT4G01370	AT4G01370	MAP kinase activity	GO:0004707	kinase activity
AT4G01370	AT4G01370	MAP kinase activity	GO:0004707	kinase activity
AT4G01370	AT4G01370	MAP kinase activity	GO:0004707	kinase activity
AT4G01370	AT4G01370	MAP kinase activity	GO:0004707	transferase activity
AT4G01370	AT4G01370	MAP kinase activity	GO:0004707	kinase activity
AT4G01370	AT4G01370	MAP kinase activity	GO:0004707	transferase activity
AT4G01370	AT4G01370	MAP kinase activity	GO:0004707	transferase activity
AT4G01370	AT4G01370	MAP kinase activity	GO:0004707	transferase activity
AT4G01370	AT4G01370	kinase activity	GO:0016301	kinase activity
AT4G01370	AT4G01370	response to cold	GO:0009409	response to stress
AT4G01370	AT4G01370	response to cold	GO:0009409	response to abiotic or biotic stimulus
AT4G01370	AT4G01370	hyperosmotic response	GO:0006972	response to stress
AT4G01370	AT4G01370	hyperosmotic response	GO:0006972	response to abiotic or biotic stimulus
AT4G01370	AT4G01370	phosphorylation	GO:0016310	other cellular processes
AT4G01370	AT4G01370	phosphorylation	GO:0016310	other metabolic processes
AT4G01370	AT4G01370	response to biotic stimulus	GO:0009607	response to abiotic or biotic stimulus
AT4G01370	AT4G01370	response to fungus	GO:0009620	response to abiotic or biotic stimulus
AT4G01370	AT4G01370	response to salt stress	GO:0009651	response to stress
AT4G01370	AT4G01370	response to salt stress	GO:0009651	response to abiotic or biotic stimulus
AT4G01370	AT4G01370	signal transduction	GO:0007165	signal transduction
AT4G01370	AT4G01370	response to stress	GO:0006950	response to stress
AT4G01370	AT4G01370	jasmonic acid and ethylene-dependent systemic resistance	GO:0009861	response to stress
AT4G01370	AT4G01370	jasmonic acid and ethylene-dependent systemic resistance	GO:0009861	response to abiotic or biotic stimulus
AT4G01370	AT4G01370	"jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway"	GO:0009868	response to stress
AT4G01370	AT4G01370	"jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway"	GO:0009868	response to abiotic or biotic stimulus
AT4G01370	AT4G01370	"systemic acquired resistance, salicylic acid mediated signaling pathway"	GO:0009862	response to stress
AT4G01370	AT4G01370	"systemic acquired resistance, salicylic acid mediated signaling pathway"	GO:0009862	response to abiotic or biotic stimulus
AT4G01370	AT4G01370	"systemic acquired resistance, salicylic acid mediated signaling pathway"	GO:0009862	response to stress
AT4G01370	AT4G01370	"systemic acquired resistance, salicylic acid mediated signaling pathway"	GO:0009862	response to abiotic or biotic stimulus
AT4G01370	AT4G01370	response to abscisic acid stimulus	GO:0009737	other biological processes
AT4G01370	AT4G01370	hypotonic salinity response	GO:0042539	response to stress
AT4G01370	AT4G01370	hypotonic salinity response	GO:0042539	response to abiotic or biotic stimulus
AT4G01370	AT4G01370	cortical microtubule organization	GO:0043622	cell organization and biogenesis
AT4G01370	AT4G01370	cytoplasm	GO:0005737	other cytoplasmic components
AT4G01370	AT4G01370	nucleus	GO:0005634	nucleus
AT4G01370	AT4G01370	nucleus	GO:0005634	nucleus
AT4G01370	AT4G01370	MAP kinase activity	GO:0004707	kinase activity
AT4G01370	AT4G01370	MAP kinase activity	GO:0004707	kinase activity
AT4G01370	AT4G01370	MAP kinase activity	GO:0004707	kinase activity
AT4G01370	AT4G01370	MAP kinase activity	GO:0004707	transferase activity
AT4G01370	AT4G01370	MAP kinase activity	GO:0004707	kinase activity
AT4G01370	AT4G01370	MAP kinase activity	GO:0004707	transferase activity
AT4G01370	AT4G01370	MAP kinase activity	GO:0004707	transferase activity
AT4G01370	AT4G01370	MAP kinase activity	GO:0004707	transferase activity
AT4G01370	AT4G01370	kinase activity	GO:0016301	kinase activity
AT4G01370	AT4G01370	response to cold	GO:0009409	response to stress
AT4G01370	AT4G01370	response to cold	GO:0009409	response to abiotic or biotic stimulus
AT4G01370	AT4G01370	hyperosmotic response	GO:0006972	response to stress
AT4G01370	AT4G01370	hyperosmotic response	GO:0006972	response to abiotic or biotic stimulus
AT4G01370	AT4G01370	phosphorylation	GO:0016310	other cellular processes
AT4G01370	AT4G01370	phosphorylation	GO:0016310	other metabolic processes
AT4G01370	AT4G01370	response to biotic stimulus	GO:0009607	response to abiotic or biotic stimulus
AT4G01370	AT4G01370	response to fungus	GO:0009620	response to abiotic or biotic stimulus
AT4G01370	AT4G01370	response to salt stress	GO:0009651	response to stress
AT4G01370	AT4G01370	response to salt stress	GO:0009651	response to abiotic or biotic stimulus
AT4G01370	AT4G01370	signal transduction	GO:0007165	signal transduction
AT4G01370	AT4G01370	response to stress	GO:0006950	response to stress
AT4G01370	AT4G01370	jasmonic acid and ethylene-dependent systemic resistance	GO:0009861	response to stress
AT4G01370	AT4G01370	jasmonic acid and ethylene-dependent systemic resistance	GO:0009861	response to abiotic or biotic stimulus
AT4G01370	AT4G01370	"jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway"	GO:0009868	response to stress
AT4G01370	AT4G01370	"jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway"	GO:0009868	response to abiotic or biotic stimulus
AT4G01370	AT4G01370	"systemic acquired resistance, salicylic acid mediated signaling pathway"	GO:0009862	response to stress
AT4G01370	AT4G01370	"systemic acquired resistance, salicylic acid mediated signaling pathway"	GO:0009862	response to abiotic or biotic stimulus
AT4G01370	AT4G01370	"systemic acquired resistance, salicylic acid mediated signaling pathway"	GO:0009862	response to stress
AT4G01370	AT4G01370	"systemic acquired resistance, salicylic acid mediated signaling pathway"	GO:0009862	response to abiotic or biotic stimulus
AT4G01370	AT4G01370	response to abscisic acid stimulus	GO:0009737	other biological processes
AT4G01370	AT4G01370	hypotonic salinity response	GO:0042539	response to stress
AT4G01370	AT4G01370	hypotonic salinity response	GO:0042539	response to abiotic or biotic stimulus
AT4G01370	AT4G01370	cortical microtubule organization	GO:0043622	cell organization and biogenesis

Gene Network Informations
Gene Network	Interact with..
Contig3435[interact with..]	EICPS029_G06_pDNR-F Contig4314 EICPM031_D06_pDNR-F Contig3728 EICPS006_F07_PDNR-F Contig3435 EICPM021_C10_pDNR-F EICPM033_F07_pDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
EICPS029_G06_pDNR-F	850	ref	XP_002327807.1	predicted protein	Populus trichocarpa	638	241 bits (616)	5e-62	114/137 (83%)	119/137 (86%)	+1
Contig4314	1805	sp	Q05046.1	CH62_CUCMA RecName: Full=Chaperonin CPN60-2, mitochondrial; AltName: Full=HSP60-2; Flags: Precursor		575	587 bits (1512)	0.0	305/355 (85%)	329/355 (92%)	+3
EICPM031_D06_pDNR-F	1025	sp	Q05046.1	CH62_CUCMA RecName: Full=Chaperonin CPN60-2, mitochondrial; AltName: Full=HSP60-2; Flags: Precursor		575	390 bits (1001)	e-106	200/215 (93%)	211/215 (98%)	+1
Contig3728	1063	emb	CBI15705.1	unnamed protein product	Vitis vinifera	300	377 bits (968)	e-102	190/237 (80%)	195/237 (82%)	+2
EICPS006_F07_PDNR-F	926	gb	ACG47588.1	60S ribosomal protein L7a	Zea mays	255	371 bits (952)	e-101	183/210 (87%)	191/210 (90%)	-1
Contig3435	1439	ref	XP_002302599.1	predicted protein	Populus trichocarpa	372	528 bits (1361)	e-148	252/286 (88%)	270/286 (94%)	+1
EICPM021_C10_pDNR-F	1087	ref	NP_001051017.1	Os03g0703400	Oryza sativa (japonica cultivar-group)	654	408 bits (1048)	e-117	196/237 (82%)	220/237 (92%)	+2
EICPM033_F07_pDNR-F	1149	ref	XP_002464024.1	hypothetical protein SORBIDRAFT_01g010800	Sorghum bicolor	653	262 bits (669)	6e-68	120/152 (78%)	140/152 (92%)	+1