Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	Contig2603	1062

Contig Map:

(ProjectName=FEICP SequenceName=Contig2603):
EICPM026-D03_pDNR-R:
EICPM026_D03_pDNR-F:
EICPM032_G01_pDNR-F:

Sequences View:[Contig2603](Contig Seguence)

1062 bases 
GCTCGCCGCAGCGACGACAGGCCAGAGTCAGAGCAGACGCCGCATACTCGTTGCATCATTCGAGGTACAGCGACGTACGGGATTCGGCCATTACGGCCG:GGGGTCGTCGAGTGTGTGCCTCTTTTTGGGGCGTCTAGGGTTAGGGTTTTATTCTTCTCTCCTCTCAGGATTTTCTGTGGAAAACATGGAGCAGCTCTCTGGTCGGTCGAAGGGTACAGTGAAGTGGTTCAACGAGATAAAGGGCTTCGGTTTCATTACTCCGGATGACGGTGGCGATGACCTTTTCGTGCACCAGTCATCTATAAAGTCGGAGGGCTATCGGACCCTTTCAGACGGCGAAGCCGTGGAGTTTGCGGTATCTGGAGGCGAGAGTTTGACGCAGGACGGCAGAAAGAACTTGGAAAAAAAGCAAGAGTTTATCAGTAAGATGGCGGACGATGACTACAACGATATGGACATGGGGTATGAGGATGAGCCGCCGGAACCTGAAATTGAGGAAGGTGCAGAGGTAGAGGAAGATAACAATGATGATGTTCCAGATGATATTGTTGGTGTTGAAAATGAAGAAAAGGACCAAGAACCAGTTGAGAAACCTAGGAAAACATCCAAATATATGACAAAGTATGAGCGTGCAAGGATATTAGGCACACGTGCTCTTCAGATCAGCATGAATGCTCCTGTAATGGTTGAGCTTGAAGGTGAAACTGATCCTCTGGAGATTGCAATGAAAGAGCTTCGGCAGCGCAAGATACCCTTCACCATTCGAAGGTATCTTCCTGATGGGAGTTATGAGGACTGGGGAGTTGATGAGCTGATAGTAGAGGACTCCTGGAAGCGGCAGGTTGGTGGAGATTGAGATTGGCCAGCCTTCAAGCCTCCCAATGCATTGCTTCGGGATCTGCAACCGAAACACGTATCTCCTGTTTATAAACTTCGTGCTAAATTTCATGTTGAGCTATGAATGTATGTAGTGCAACTTTTGTCTATGTAGGGATTTTGAGCAC:ACTTTGATTTATTGTTCATTACCGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequences View:[Contig2603](Singleton Sequence)

Contig2603 1062  bases 
GCTCGCCGCAGCGACGACAGGCCAGAGTCAGAGCAGACGCCGCATACTCGTTGCATCATTCGAGGTACAGCGACGTACGGGATTCGGCCATTACGGCCG:GGGGTCGTCGAGTGTGTGCCTCTTTTTGGGGCGTCTAGGGTTAGGGTTTTATTCTTCTCTCCTCTCAGGATTTTCTGTGGAAAACATGGAGCAGCTCTCTGGTCGGTCGAAGGGTACAGTGAAGTGGTTCAACGAGATAAAGGGCTTCGGTTTCATTACTCCGGATGACGGTGGCGATGACCTTTTCGTGCACCAGTCATCTATAAAGTCGGAGGGCTATCGGACCCTTTCAGACGGCGAAGCCGTGGAGTTTGCGGTATCTGGAGGCGAGAGTTTGACGCAGGACGGCAGAAAGAACTTGGAAAAAAAGCAAGAGTTTATCAGTAAGATGGCGGACGATGACTACAACGATATGGACATGGGGTATGAGGATGAGCCGCCGGAACCTGAAATTGAGGAAGGTGCAGAGGTAGAGGAAGATAACAATGATGATGTTCCAGATGATATTGTTGGTGTTGAAAATGAAGAAAAGGACCAAGAACCAGTTGAGAAACCTAGGAAAACATCCAAATATATGACAAAGTATGAGCGTGCAAGGATATTAGGCACACGTGCTCTTCAGATCAGCATGAATGCTCCTGTAATGGTTGAGCTTGAAGGTGAAACTGATCCTCTGGAGATTGCAATGAAAGAGCTTCGGCAGCGCAAGATACCCTTCACCATTCGAAGGTATCTTCCTGATGGGAGTTATGAGGACTGGGGAGTTGATGAGCTGATAGTAGAGGACTCCTGGAAGCGGCAGGTTGGTGGAGATTGAGATTGGCCAGCCTTCAAGCCTCCCAATGCATTGCTTCGGGATCTGCAACCGAAACACGTATCTCCTGTTTATAAACTTCGTGCTAAATTTCATGTTGAGCTATGAATGTATGTAGTGCAACTTTTGTCTATGTAGGGATTTTGAGCAC:ACTTTGATTTATTGTTCATTACCGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002318240.1	predicted protein	Populus trichocarpa	143	204 bits (518)	2e-50	104/143 (72%)	111/143 (77%), Gaps = 1/143 (0%)	+2

KEGG Pathway	GO
Contig2603[3 Pathway]	Contig2603[56 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Transcription	03020	RNA polymerase	[PATH:ath03020]	Contig2603	AT5G51940	FEICP
Metabolism	Nucleotide Metabolism	00230	Purine metabolism	[PATH:ath00230]	Contig2603	AT5G51940	FEICP
Metabolism	Nucleotide Metabolism	00240	Pyrimidine metabolism	[PATH:ath00240]	Contig2603	AT5G51940	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G51940	AT5G51940	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT5G51940	AT5G51940	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT5G51940	AT5G51940	DNA binding	GO:0003677	DNA or RNA binding
AT5G51940	AT5G51940	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	transcription
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other cellular processes
AT5G51940	AT5G51940	"transcription, DNA-dependent"	GO:0006351	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
Contig2603[interact with..]	EICPS039_G05_pDNR-F Contig2405 EICPM056-H01_pDNR-R EICPS054_B10_pDNR-F EICPM004-A9_pDNR-R EICPS023_B06_pDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
EICPS039_G05_pDNR-F	634	ref	XP_002285871.1	PREDICTED: similar to PBC1 (20S proteasome beta subunit C1); peptidase isoform 1	Vitis vinifera	204	259 bits (661)	2e-67	124/134 (92%)	132/134 (98%)	+3
Contig2405	1041	ref	XP_002441353.1	hypothetical protein SORBIDRAFT_09g025080	Sorghum bicolor	267	396 bits (1018)	e-108	197/265 (74%)	221/265 (83%), Gaps = 7/265 (2%)	+3
EICPM056-H01_pDNR-R	1030	ref	XP_002441353.1	hypothetical protein SORBIDRAFT_09g025080	Sorghum bicolor	267	256 bits (654)	3e-66	129/180 (71%)	147/180 (81%), Gaps = 3/180 (1%)	+2
EICPS054_B10_pDNR-F	901	ref	NP_001044390.1	Os01g0772200	Oryza sativa (japonica cultivar-group)	117	72.8 bits (177)	5e-11	32/35 (91%)	33/35 (94%)	+1
EICPM004-A9_pDNR-R	997	ref	XP_002518700.1	DNA-directed RNA polymerase II subunit, putative	Ricinus communis	318	225 bits (573)	5e-59	119/172 (69%)	135/172 (78%)	+1
EICPS023_B06_pDNR-F	876	gb	ACF06531.1	anaphase-promoting complex subunit 10	Elaeis guineensis	192	318 bits (814)	6e-85	154/192 (80%)	164/192 (85%)	+2