Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	Contig0663	1030

Contig Map:

(ProjectName=FPTEVCPM SequenceName=Contig0663):
FPTEVCPM052_C10_PDNR-F:
FPTEVCPM052_C09_PDNR-F:

Sequences View:[Contig0663](Contig Seguence)

1030 bases 
GGTCGAGTTCCGCCGCCATTTTCTTAGAGATCCGAATCCACAGCGCTCGATCTAGAGGAGGGATTGCAGTTAGGAAAATGACGGAGTCGGAGGCGAACTCTGTGATCCCGGAGTCCGTATTGAAAAAGCGCAAGAGGGAGGAGCAGTGGGCTTTAGAGAAGAAGCAGAAGTTAGATGAGAAGAGGAAGAAGAATAAAGAGAATCGCAAACTCATTTTTAAGAGGGCAGAACAGTATGTCAAAGAGTACCAGAAGCAGGAGAGGGAGCTGATACAGCTAAAGCGCGAGGCTAGACTGAAAGGAGGATTCTACGTTTGCCCCGAGGCCAAGCTTCTGTTCATCATCAGAATCCGCGGGATCAATGCTATTGACCCAAAAACTAAGAAGATTTTGCAGCTTTTGCGCCTGAGACAGATTTTTAATGGAGTATTCTTAAAAGTGAACAAAGCTACCATTAATATGCTCCGCAGAGTGGAGCCCTATGTCACCTATGGTTATCCAAACCTTAAAAGCGTAAGGGAGTTGATATACAAGAGGGGCTATGGGAAACTGAACAAGCAAAGGATTCCATTGACCAGCAATGACATCATTGAGCAGGGGCTAGGAAAGCATGATATTATATGCATTGAGGACCTCATTCATGAAATTTTCTCTGTAGGGCCTCATTTTAAGGAGGCCAATAACTTTCTTTGGCCATTTAAGCTGAAGGCACCACTTGGAGGACTGAAGAAGAAGAGGAATCATTATGTTGAAGGTGGAGATGCTGGAAACAGGGAAGATTATATAAACGAGCTTATCCGCCGCATGAACTAGGTTTAGTCGCCCTTCTTGCATCATCTATATTGGTTTTTTGAAGAACAAATTTGAGACTTGCTGCAGTTTTTTTGTTTGCTTATTTTGAGTGGAGGAATTTTCAGTTAGAATTAATTTCTGTTCTATTTTGTTTCAATATGATGACTAAAGATTTTTTTCTGTTTTTATGATGATTTTAAGATATTGTGTTGATCAGGAAAAAAAAAAAAAAAAAAAAA

Sequences View:[Contig0663](Singleton Sequence)

Contig0663 1030  bases 
GGTCGAGTTCCGCCGCCATTTTCTTAGAGATCCGAATCCACAGCGCTCGATCTAGAGGAGGGATTGCAGTTAGGAAAATGACGGAGTCGGAGGCGAACTCTGTGATCCCGGAGTCCGTATTGAAAAAGCGCAAGAGGGAGGAGCAGTGGGCTTTAGAGAAGAAGCAGAAGTTAGATGAGAAGAGGAAGAAGAATAAAGAGAATCGCAAACTCATTTTTAAGAGGGCAGAACAGTATGTCAAAGAGTACCAGAAGCAGGAGAGGGAGCTGATACAGCTAAAGCGCGAGGCTAGACTGAAAGGAGGATTCTACGTTTGCCCCGAGGCCAAGCTTCTGTTCATCATCAGAATCCGCGGGATCAATGCTATTGACCCAAAAACTAAGAAGATTTTGCAGCTTTTGCGCCTGAGACAGATTTTTAATGGAGTATTCTTAAAAGTGAACAAAGCTACCATTAATATGCTCCGCAGAGTGGAGCCCTATGTCACCTATGGTTATCCAAACCTTAAAAGCGTAAGGGAGTTGATATACAAGAGGGGCTATGGGAAACTGAACAAGCAAAGGATTCCATTGACCAGCAATGACATCATTGAGCAGGGGCTAGGAAAGCATGATATTATATGCATTGAGGACCTCATTCATGAAATTTTCTCTGTAGGGCCTCATTTTAAGGAGGCCAATAACTTTCTTTGGCCATTTAAGCTGAAGGCACCACTTGGAGGACTGAAGAAGAAGAGGAATCATTATGTTGAAGGTGGAGATGCTGGAAACAGGGAAGATTATATAAACGAGCTTATCCGCCGCATGAACTAGGTTTAGTCGCCCTTCTTGCATCATCTATATTGGTTTTTTGAAGAACAAATTTGAGACTTGCTGCAGTTTTTTTGTTTGCTTATTTTGAGTGGAGGAATTTTCAGTTAGAATTAATTTCTGTTCTATTTTGTTTCAATATGATGACTAAAGATTTTTTTCTGTTTTTATGATGATTTTAAGATATTGTGTTGATCAGGAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	NP_187967.1	60S ribosomal protein L7 (RPL7D)	Arabidopsis thaliana	244	369 bits (946)	e-100	183/244 (75%)	201/244 (82%)	+3

KEGG Pathway	GO
Contig0663[1 Pathway]	Contig0663[58 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Translation	03010	Ribosome	[PATH:ath03010]	Contig0663	AT3G13580	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G13580	AT3G13580	chloroplast	GO:0009507	chloroplast
AT3G13580	AT3G13580	membrane	GO:0016020	other membranes
AT3G13580	AT3G13580	structural constituent of ribosome	GO:0003735	structural molecule activity
AT3G13580	AT3G13580	translation	GO:0006412	protein metabolism
AT3G13580	AT3G13580	translation	GO:0006412	other cellular processes
AT3G13580	AT3G13580	translation	GO:0006412	other metabolic processes
AT3G13580	AT3G13580	transcription regulator activity	GO:0030528	other molecular functions
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	cytosol
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	cytosol
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	ribosome
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	ribosome
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	other intracellular components
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	other intracellular components
AT3G13580	AT3G13580	large ribosomal subunit	GO:0015934	ribosome
AT3G13580	AT3G13580	large ribosomal subunit	GO:0015934	other cytoplasmic components
AT3G13580	AT3G13580	large ribosomal subunit	GO:0015934	other intracellular components
AT3G13580	AT3G13580	structural constituent of ribosome	GO:0003735	structural molecule activity
AT3G13580	AT3G13580	translation	GO:0006412	protein metabolism
AT3G13580	AT3G13580	translation	GO:0006412	other cellular processes
AT3G13580	AT3G13580	translation	GO:0006412	other metabolic processes
AT3G13580	AT3G13580	cytosolic large ribosomal subunit	GO:0022625	cytosol
AT3G13580	AT3G13580	cytosolic large ribosomal subunit	GO:0022625	ribosome
AT3G13580	AT3G13580	cytosolic large ribosomal subunit	GO:0022625	other cytoplasmic components
AT3G13580	AT3G13580	cytosolic large ribosomal subunit	GO:0022625	other intracellular components
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	cytosol
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	ribosome
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	other intracellular components
AT3G13580	AT3G13580	membrane	GO:0016020	other membranes
AT3G13580	AT3G13580	structural constituent of ribosome	GO:0003735	structural molecule activity
AT3G13580	AT3G13580	translation	GO:0006412	protein metabolism
AT3G13580	AT3G13580	translation	GO:0006412	other cellular processes
AT3G13580	AT3G13580	translation	GO:0006412	other metabolic processes
AT3G13580	AT3G13580	transcription regulator activity	GO:0030528	other molecular functions
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	cytosol
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	cytosol
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	ribosome
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	ribosome
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	other intracellular components
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	other intracellular components
AT3G13580	AT3G13580	membrane	GO:0016020	other membranes
AT3G13580	AT3G13580	structural constituent of ribosome	GO:0003735	structural molecule activity
AT3G13580	AT3G13580	translation	GO:0006412	protein metabolism
AT3G13580	AT3G13580	translation	GO:0006412	other cellular processes
AT3G13580	AT3G13580	translation	GO:0006412	other metabolic processes
AT3G13580	AT3G13580	transcription regulator activity	GO:0030528	other molecular functions
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	cytosol
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	cytosol
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	ribosome
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	ribosome
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	other intracellular components
AT3G13580	AT3G13580	cytosolic ribosome	GO:0022626	other intracellular components

Gene Network Informations
Gene Network	Interact with..
Contig0663[interact with..]	FPTEVCPM084_C03_PDNR-F FPTEVCPM089_C12_PDNR-F Contig0860 FPTEVCPM040_E01_PDNR-F Contig1208 FPTEVCPM046_H03_PDNR-F Contig0151 Contig0463 FPTEVCPM067_C11_PDNR-F FPTEVCPM080_E04_PDNR-F FPTEVCPM033_A03_PDNR-F Contig0663 FPTEVCPM078_F10_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FPTEVCPM084_C03_PDNR-F	988	gb	AAK09225.1	AC084320_12 putative inosine monophosphate dehydrogenase	Oryza sativa Japonica Group	501	370 bits (949)	e-100	186/231 (80%)	205/231 (88%)	+2
FPTEVCPM089_C12_PDNR-F	426	ref	NP_001045607.1	Os02g0103700	Oryza sativa (japonica cultivar-group)	192	156 bits (394)	8e-37	76/85 (89%)	85/85 (100%)	+1
Contig0860	1378	ref	XP_002524302.1	60S ribosomal protein L3, putative	Ricinus communis	389	701 bits (1810)	0.0	334/381 (87%)	358/381 (93%)	+3
FPTEVCPM040_E01_PDNR-F	1018	gb	ACF06589.1	ribosomal protein	Elaeis guineensis	182	308 bits (790)	5e-82	154/183 (84%)	163/183 (89%)	+2
Contig1208	793	gb	ABA40430.1	ribosomal protein L27a-like protein	Solanum tuberosum	148	253 bits (645)	2e-65	122/149 (81%)	126/149 (84%)	+2
FPTEVCPM046_H03_PDNR-F	802	ref	XP_002309256.1	predicted protein	Populus trichocarpa	146	264 bits (675)	6e-69	127/149 (85%)	133/149 (89%)	+3
Contig0151	940	ref	XP_002531594.1	40S ribosomal protein S5, putative	Ricinus communis	211	359 bits (922)	2e-97	180/211 (85%)	195/211 (92%)	+2
Contig0463	452	gb	ACG48499.1	40S ribosomal protein S5	Zea mays	199	126 bits (317)	7e-28	65/65 (100%)	65/65 (100%)	+1
FPTEVCPM067_C11_PDNR-F	883	gb	ABB53473.1	GDP-mannose pyrophosphorylase	Malpighia glabra	361	394 bits (1011)	e-108	194/217 (89%)	204/217 (94%)	+2
FPTEVCPM080_E04_PDNR-F	1184	emb	CAB79775.1	GDP-mannose pyrophosphorylase like protein	Arabidopsis thaliana	351	313 bits (802)	e-106	162/201 (80%)	179/201 (89%), Gaps = 1/201 (0%)	+2
FPTEVCPM033_A03_PDNR-F	798	ref	XP_002311621.1	predicted protein	Populus trichocarpa	133	197 bits (501)	1e-48	102/123 (82%)	107/123 (86%)	+2
Contig0663	1030	ref	NP_187967.1	60S ribosomal protein L7 (RPL7D)	Arabidopsis thaliana	244	369 bits (946)	e-100	183/244 (75%)	201/244 (82%)	+3
FPTEVCPM078_F10_PDNR-F	470	ref	XP_002447060.1	hypothetical protein SORBIDRAFT_06g027780	Sorghum bicolor	190	109 bits (272)	2e-31	47/56 (83%)	52/56 (92%)	+3