Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	Contig0860	1378

Contig Map:

(ProjectName=FPTEVCPM SequenceName=Contig0860):
FPTEVCPM075_C07_PDNR-F:
FPTEVCPM013_G03_PDNR-F:

Sequences View:[Contig0860](Contig Seguence)

1378 bases 
GGGGAGAAAGTCCGCCGTCTTCGAGGAGCATCAGGTAAGGAAGCAGAATGTCGCACAGGAAATTTGAGCATCCAAGGCACGGGTCGCTAGGGTTTCTTCCAAGGAAGCGTTCCAGTCGTCACCGTGGAAAAGTTAAGTCATTCCCAAGGGATGACCCATCAAAACCATGCAAACTTACAGCTTTCCTTGGGTATAAGGCGGGCATGACTCACATTGTTCGTGAGGTGGAGAAACCGGGATCAAAGCTTCACAAGAAAGAAACATGTGAGGCTGTGACGGTCATTGAGACTCCACCCATGGTCATTGTTGGGGTGGTTGGTTATATTAAGACCCCTCGCGGCCTTCGTTCGCTTAATACTATATGGGCTCAACATCTGAGTGAGGAACTCAGGAGAAGGTTTTATAAGAACTGGTATAAGTCCAAGAAGAAGGCATTTACCAAATATTCAAAGAAATATGAATCTGAGGATGGAAAGAAAGAGATCCAAACTCAACTGGAGAAGATGAAAAAATATGCATCTGTTGTCCGTGTATTGGCTCACACTCAGATTAGGAAGATGAAGGGCCTGAAGCGGAAGAAGGCTCATTTGATGGAGATTCGGGTGAATGGCGGAACTGTTGCTCAAAAAGTTGACTATGCCTATAGTTTCTTTGAGAAGCAGGCCCCCATTGATGCGGTCTTCCAGAAAGATGAGATGATTGATATTATTGGTGTGACTAAGGGTAAGGGATATGAGGGTGTTGTTACTCGTTGGGGCGTGACTCGTCTACCTCGAAAGACTCACAGGGGACTTCGCAAGGTTGCTTGTATCGGTGCATGGCATCCTGCCCGAGTTTCTTTCACTGTTGCACGTGCTGGTCAGAACGGTTATCACCACCGTACAGAGATGAACAAGAAGGTGTATAAGATCGGAAAAGCTGGAGATGAGTCCCACTCGGCAAGCACTGAGTTTGATAGGACTGAAAAGGATATCACTCCCATTGGTGGCTTCCCTCACTATGGTGTGGTGAAAGATGACTATCTTCTGATCAAAGGTTGCTGCGTTGGACCGAAGAAGAGAGTCGTCACGCTTCGCCAGTCTCTGCTCAAGCAGACATCTCGTCTCGCCCTCGAGGAGATTAAGCTCAAATTCATTGATACTTCGTCCAAGTTTGGCCACGGACGTTTCCAGACCACCCAGGAGAAGCAGAAATTCTATGGAAAGCTCAAGGCTTAAAAGAGGAGGAGGTTCTAGTTGTAATTTTGAGATTCTAAATAACATTTTTTTTATGAGAGAATGCTTTTTTTTCTTATGTTGACACTACATTCAAGTTTGATGATGTATCCGACTCTTGTTGATGTATTTGTTTTGAAGAAAAAAAAAAAAAAAAAAAAAAA

Sequences View:[Contig0860](Singleton Sequence)

Contig0860 1378  bases 
GGGGAGAAAGTCCGCCGTCTTCGAGGAGCATCAGGTAAGGAAGCAGAATGTCGCACAGGAAATTTGAGCATCCAAGGCACGGGTCGCTAGGGTTTCTTCCAAGGAAGCGTTCCAGTCGTCACCGTGGAAAAGTTAAGTCATTCCCAAGGGATGACCCATCAAAACCATGCAAACTTACAGCTTTCCTTGGGTATAAGGCGGGCATGACTCACATTGTTCGTGAGGTGGAGAAACCGGGATCAAAGCTTCACAAGAAAGAAACATGTGAGGCTGTGACGGTCATTGAGACTCCACCCATGGTCATTGTTGGGGTGGTTGGTTATATTAAGACCCCTCGCGGCCTTCGTTCGCTTAATACTATATGGGCTCAACATCTGAGTGAGGAACTCAGGAGAAGGTTTTATAAGAACTGGTATAAGTCCAAGAAGAAGGCATTTACCAAATATTCAAAGAAATATGAATCTGAGGATGGAAAGAAAGAGATCCAAACTCAACTGGAGAAGATGAAAAAATATGCATCTGTTGTCCGTGTATTGGCTCACACTCAGATTAGGAAGATGAAGGGCCTGAAGCGGAAGAAGGCTCATTTGATGGAGATTCGGGTGAATGGCGGAACTGTTGCTCAAAAAGTTGACTATGCCTATAGTTTCTTTGAGAAGCAGGCCCCCATTGATGCGGTCTTCCAGAAAGATGAGATGATTGATATTATTGGTGTGACTAAGGGTAAGGGATATGAGGGTGTTGTTACTCGTTGGGGCGTGACTCGTCTACCTCGAAAGACTCACAGGGGACTTCGCAAGGTTGCTTGTATCGGTGCATGGCATCCTGCCCGAGTTTCTTTCACTGTTGCACGTGCTGGTCAGAACGGTTATCACCACCGTACAGAGATGAACAAGAAGGTGTATAAGATCGGAAAAGCTGGAGATGAGTCCCACTCGGCAAGCACTGAGTTTGATAGGACTGAAAAGGATATCACTCCCATTGGTGGCTTCCCTCACTATGGTGTGGTGAAAGATGACTATCTTCTGATCAAAGGTTGCTGCGTTGGACCGAAGAAGAGAGTCGTCACGCTTCGCCAGTCTCTGCTCAAGCAGACATCTCGTCTCGCCCTCGAGGAGATTAAGCTCAAATTCATTGATACTTCGTCCAAGTTTGGCCACGGACGTTTCCAGACCACCCAGGAGAAGCAGAAATTCTATGGAAAGCTCAAGGCTTAAAAGAGGAGGAGGTTCTAGTTGTAATTTTGAGATTCTAAATAACATTTTTTTTATGAGAGAATGCTTTTTTTTCTTATGTTGACACTACATTCAAGTTTGATGATGTATCCGACTCTTGTTGATGTATTTGTTTTGAAGAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002524302.1	60S ribosomal protein L3, putative	Ricinus communis	389	701 bits (1810)	0.0	334/381 (87%)	358/381 (93%)	+3

KEGG Pathway	GO
Contig0860[1 Pathway]	Contig0860[18 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Translation	03010	Ribosome	[PATH:ath03010]	Contig0860	AT1G61580	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G61580	AT1G61580	membrane	GO:0016020	other membranes
AT1G61580	AT1G61580	structural constituent of ribosome	GO:0003735	structural molecule activity
AT1G61580	AT1G61580	translation	GO:0006412	protein metabolism
AT1G61580	AT1G61580	translation	GO:0006412	other cellular processes
AT1G61580	AT1G61580	translation	GO:0006412	other metabolic processes
AT1G61580	AT1G61580	ribosome	GO:0005840	ribosome
AT1G61580	AT1G61580	structural constituent of ribosome	GO:0003735	structural molecule activity
AT1G61580	AT1G61580	translation	GO:0006412	protein metabolism
AT1G61580	AT1G61580	translation	GO:0006412	other cellular processes
AT1G61580	AT1G61580	translation	GO:0006412	other metabolic processes
AT1G61580	AT1G61580	cytosolic large ribosomal subunit	GO:0022625	cytosol
AT1G61580	AT1G61580	cytosolic large ribosomal subunit	GO:0022625	ribosome
AT1G61580	AT1G61580	cytosolic large ribosomal subunit	GO:0022625	cytosol
AT1G61580	AT1G61580	cytosolic large ribosomal subunit	GO:0022625	ribosome
AT1G61580	AT1G61580	cytosolic large ribosomal subunit	GO:0022625	other cytoplasmic components
AT1G61580	AT1G61580	cytosolic large ribosomal subunit	GO:0022625	other intracellular components
AT1G61580	AT1G61580	cytosolic large ribosomal subunit	GO:0022625	other cytoplasmic components
AT1G61580	AT1G61580	cytosolic large ribosomal subunit	GO:0022625	other intracellular components

Gene Network Informations
Gene Network	Interact with..
Contig0860[interact with..]	FPTEVCPM084_C03_PDNR-F FPTEVCPM089_C12_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FPTEVCPM084_C03_PDNR-F	988	gb	AAK09225.1	AC084320_12 putative inosine monophosphate dehydrogenase	Oryza sativa Japonica Group	501	370 bits (949)	e-100	186/231 (80%)	205/231 (88%)	+2
FPTEVCPM089_C12_PDNR-F	426	ref	NP_001045607.1	Os02g0103700	Oryza sativa (japonica cultivar-group)	192	156 bits (394)	8e-37	76/85 (89%)	85/85 (100%)	+1