Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	FPTEVCPM033_A03_PDNR-F	798

Contig Map:

(ProjectName=FPTEVCPM
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FPTEVCPM033_A03_PDNR-F](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002311621.1	predicted protein	Populus trichocarpa	133	197 bits (501)	1e-48	102/123 (82%)	107/123 (86%)	+2

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[25 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Translation	03010	Ribosome	[PATH:ath03010]	FPTEVCPM033_A03_PDNR-F	AT3G04920	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G04920	AT3G04920	chloroplast	GO:0009507	chloroplast
AT3G04920	AT3G04920	membrane	GO:0016020	other membranes
AT3G04920	AT3G04920	nucleolus	GO:0005730	nucleus
AT3G04920	AT3G04920	nucleolus	GO:0005730	other intracellular components
AT3G04920	AT3G04920	plasma membrane	GO:0005886	plasma membrane
AT3G04920	AT3G04920	plasma membrane	GO:0005886	plasma membrane
AT3G04920	AT3G04920	nucleotide binding	GO:0000166	nucleotide binding
AT3G04920	AT3G04920	structural constituent of ribosome	GO:0003735	structural molecule activity
AT3G04920	AT3G04920	translation	GO:0006412	protein metabolism
AT3G04920	AT3G04920	translation	GO:0006412	other cellular processes
AT3G04920	AT3G04920	translation	GO:0006412	other metabolic processes
AT3G04920	AT3G04920	cytosolic ribosome	GO:0022626	cytosol
AT3G04920	AT3G04920	cytosolic ribosome	GO:0022626	ribosome
AT3G04920	AT3G04920	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT3G04920	AT3G04920	cytosolic ribosome	GO:0022626	other intracellular components
AT3G04920	AT3G04920	ribosome	GO:0005840	ribosome
AT3G04920	AT3G04920	structural constituent of ribosome	GO:0003735	structural molecule activity
AT3G04920	AT3G04920	translation	GO:0006412	protein metabolism
AT3G04920	AT3G04920	translation	GO:0006412	other cellular processes
AT3G04920	AT3G04920	translation	GO:0006412	other metabolic processes
AT3G04920	AT3G04920	ribosome biogenesis	GO:0042254	cell organization and biogenesis
AT3G04920	AT3G04920	cytosolic small ribosomal subunit	GO:0022627	cytosol
AT3G04920	AT3G04920	cytosolic small ribosomal subunit	GO:0022627	ribosome
AT3G04920	AT3G04920	cytosolic small ribosomal subunit	GO:0022627	other cytoplasmic components
AT3G04920	AT3G04920	cytosolic small ribosomal subunit	GO:0022627	other intracellular components

Gene Network Informations
Gene Network	Interact with..
FPTEVCPM033_A03_PDNR-F[interact with..]	FPTEVCPM089_C12_PDNR-F Contig0860 FPTEVCPM040_E01_PDNR-F Contig1208 FPTEVCPM046_H03_PDNR-F Contig0151 Contig0463

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FPTEVCPM089_C12_PDNR-F	426	ref	NP_001045607.1	Os02g0103700	Oryza sativa (japonica cultivar-group)	192	156 bits (394)	8e-37	76/85 (89%)	85/85 (100%)	+1
Contig0860	1378	ref	XP_002524302.1	60S ribosomal protein L3, putative	Ricinus communis	389	701 bits (1810)	0.0	334/381 (87%)	358/381 (93%)	+3
FPTEVCPM040_E01_PDNR-F	1018	gb	ACF06589.1	ribosomal protein	Elaeis guineensis	182	308 bits (790)	5e-82	154/183 (84%)	163/183 (89%)	+2
Contig1208	793	gb	ABA40430.1	ribosomal protein L27a-like protein	Solanum tuberosum	148	253 bits (645)	2e-65	122/149 (81%)	126/149 (84%)	+2
FPTEVCPM046_H03_PDNR-F	802	ref	XP_002309256.1	predicted protein	Populus trichocarpa	146	264 bits (675)	6e-69	127/149 (85%)	133/149 (89%)	+3
Contig0151	940	ref	XP_002531594.1	40S ribosomal protein S5, putative	Ricinus communis	211	359 bits (922)	2e-97	180/211 (85%)	195/211 (92%)	+2
Contig0463	452	gb	ACG48499.1	40S ribosomal protein S5	Zea mays	199	126 bits (317)	7e-28	65/65 (100%)	65/65 (100%)	+1