Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	FPTEVCPM030_B02_PDNR-F	1016

Contig Map:

(ProjectName=FPTEVCPM
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FPTEVCPM030_B02_PDNR-F](Singleton Sequence)

FPTEVCPM030_B02_PDNR-F 1016  bases 
GAACTTTAAACTAAAATTAATCGAAACCCTCGCCTACACTGCCCCTCGCCTGCCTGCTCCTCTCCCCGAACCCTCGCATGTGCCGCCTCCGCTTTCTGGTTTCGTCCAGAACTATCGCCGTCGTCACTGAACCCTCGCGATACAGTCGCAAGTAGAGCTAACTGGTTACGCAACTTCGGGATCGCGGCTTACAGAGATCCGAAACTTCCATTTTGTTTCCTCCATCTGCTCCTCTCCTACGCGAAACCGTTGAGCAAGGAAAACCAAGCAGCGCTTTGAAATCTTAGGTCAGAAGGGATGGTGCTCAAGACTGAACTTTGCCGATTTAGTGGTGCTAAGATTTACCCTGGAAAGGGTATTAGATTTGTTCGAGGTGACTCCCAGGTCTTTCTTTTTTCAAACTCAAAATGTAAACGATGTTTTCACAACCGGCTGAAACCTGCCAAACTTACCTGGACAGCAATGTACAGGAAACAGCACAAGAAGGATATTCATGATGAATCTGTGAAGAAAAGGCGTCGTGCTACTAAGAAGCCTCTCTCCAGGTCAATTGTCGGCGCTTCCTTGGAGGTCATTCAAAAGAAAAGAACTGAGAAGCCTGAAGTTCGTGATGCTGCCAGAGAAGCGGCACTGCGTGAAATAAAGGAGCGGATAAAAAAGACTAAGGATGAGAAGAAGACCAAGAAGGCTGAGGCTTTGGCCAAAACGCAGAAGACCCAGACCAAGGGTAATGTGCTCAAGGGTTCCAAGGGACCAAAGCTTGGTGGTGGTGGTGGGAAGCGTTGAGGACTTGATATCCTTAATTATATGCTTCTTTCTTACTTTCTCATGTGATCAGAAATTTTCTCCTGAATTCGTTGTTTTGCTTTGGTTCGACTTTTATAGCTGCTTTAATGTGTTCCAAGTCAGGATATGATTTTAGCTCTAAATTTCCTTCATTTGGTCTGTTATGCGATTTTGGAAACTTTATGATTATCTAATTTTGTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	NP_001150133.1	60S ribosomal protein L24	Zea mays	161	207 bits (527)	1e-51	102/111 (91%)	105/111 (94%)	+1

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[15 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Translation	03010	Ribosome	[PATH:ath03010]	FPTEVCPM030_B02_PDNR-F	AT3G53020	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G53020	AT3G53020	nucleolus	GO:0005730	nucleus
AT3G53020	AT3G53020	nucleolus	GO:0005730	other intracellular components
AT3G53020	AT3G53020	structural constituent of ribosome	GO:0003735	structural molecule activity
AT3G53020	AT3G53020	ribosome	GO:0005840	ribosome
AT3G53020	AT3G53020	structural constituent of ribosome	GO:0003735	structural molecule activity
AT3G53020	AT3G53020	translation	GO:0006412	protein metabolism
AT3G53020	AT3G53020	translation	GO:0006412	other cellular processes
AT3G53020	AT3G53020	translation	GO:0006412	other metabolic processes
AT3G53020	AT3G53020	ribosome biogenesis	GO:0042254	cell organization and biogenesis
AT3G53020	AT3G53020	auxin mediated signaling pathway	GO:0009734	other biological processes
AT3G53020	AT3G53020	gynoecium development	GO:0048467	developmental processes
AT3G53020	AT3G53020	cytosolic large ribosomal subunit	GO:0022625	cytosol
AT3G53020	AT3G53020	cytosolic large ribosomal subunit	GO:0022625	ribosome
AT3G53020	AT3G53020	cytosolic large ribosomal subunit	GO:0022625	other cytoplasmic components
AT3G53020	AT3G53020	cytosolic large ribosomal subunit	GO:0022625	other intracellular components

Gene Network Informations
Gene Network	Interact with..
FPTEVCPM030_B02_PDNR-F[interact with..]	Contig0860 FPTEVCPM040_E01_PDNR-F Contig1208 FPTEVCPM046_H03_PDNR-F Contig0151 Contig0463 Contig0663 FPTEVCPM078_F10_PDNR-F FPTEVCPM019_D05_pNDR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig0860	1378	ref	XP_002524302.1	60S ribosomal protein L3, putative	Ricinus communis	389	701 bits (1810)	0.0	334/381 (87%)	358/381 (93%)	+3
FPTEVCPM040_E01_PDNR-F	1018	gb	ACF06589.1	ribosomal protein	Elaeis guineensis	182	308 bits (790)	5e-82	154/183 (84%)	163/183 (89%)	+2
Contig1208	793	gb	ABA40430.1	ribosomal protein L27a-like protein	Solanum tuberosum	148	253 bits (645)	2e-65	122/149 (81%)	126/149 (84%)	+2
FPTEVCPM046_H03_PDNR-F	802	ref	XP_002309256.1	predicted protein	Populus trichocarpa	146	264 bits (675)	6e-69	127/149 (85%)	133/149 (89%)	+3
Contig0151	940	ref	XP_002531594.1	40S ribosomal protein S5, putative	Ricinus communis	211	359 bits (922)	2e-97	180/211 (85%)	195/211 (92%)	+2
Contig0463	452	gb	ACG48499.1	40S ribosomal protein S5	Zea mays	199	126 bits (317)	7e-28	65/65 (100%)	65/65 (100%)	+1
Contig0663	1030	ref	NP_187967.1	60S ribosomal protein L7 (RPL7D)	Arabidopsis thaliana	244	369 bits (946)	e-100	183/244 (75%)	201/244 (82%)	+3
FPTEVCPM078_F10_PDNR-F	470	ref	XP_002447060.1	hypothetical protein SORBIDRAFT_06g027780	Sorghum bicolor	190	109 bits (272)	2e-31	47/56 (83%)	52/56 (92%)	+3
FPTEVCPM019_D05_pNDR-F	665	gb	AAY41426.1	putative L24 ribosomal protein	Ipomoea batatas	146	169 bits (428)	2e-40	86/106 (81%)	90/106 (84%)	+3