Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	Contig0340	2301

Contig Map:

(ProjectName=FPTEVCPM SequenceName=Contig0340):
FPTEVCPM026_B06_PDNR-F:
FPTEVCPM051_H01_PDNR-F:
FPTEVCPM005_F04_PDNR-F:
FPTEVCPM090_F01_PDNR-F:
FPTEVCPM087_D11_PDNR-F:
FPTEVCPM049_H11_PDNR-F:
FPTEVCPM011_C11_PDNR-F:
FPTEVCPM031_D07_PDNR-F:
FPTEVCPM091_H12_PDNR-F:
FPTEVCPM092_F01_PDNR-F:
FPTEVCPM029_F02_PDNR-F:
FPTEVCPM061_F02_PDNR-F:
FPTEVCPM071_E12_PDNR-F:
FPTEVCPM036_G02_PDNR-F:
FPTEVCPM008_H07_PDNR-F:
FPTEVCPM001_G08_pDNR-F:
FPTEVCPM071_C02_PDNR-F:
FPTEVCPM021_A08_pDNR-F:

Sequences View:[Contig0340](Contig Seguence)

2301 bases 
GCTCTGTAGACCTCATTCTGAAACCCTAACTAGCTGCCGTCGCAACATCTCCCTCTCTCTTTTATTTTCTCTGCTCTCAGCTCTCAATCCTCTAGATATGGCCGGAAAGGGTGAGGGCCCTGCGATTGGTATTGATCTAGGTACAACGTACTCTTGCGTCGGAGTATGGCAGCACGATCGGGTCGAAATCATCGCAAACGACCAAGGTAACCGTACGACCCCGTCGTATGTTGCGTTCACCGACACCGAGCGGCTGATCGGCGATGCTGCCAAGAATCAGGTCGCTATGAATCCCATCAACACCGTCTTTGATGCCAAGCGATTGATTGGTAGGCGGTATACTGATGCTTCAGTACAGAGTGATATCAAGCTTTGGCCCTTCAAAGTTATTCCTGGACCTGGAGACAAGCCCATGATTGTTGTCCAGTACAAGGGAGAAGAAAAGCAGTTTGCAGCTGAAGAAATCTCATCAATGGTTCTAATTAAGATGCGTGAGATTGCTGAGGCCTATTTAGGATCCTCTGTAAAGAACGCTGTTGTCACTGTTCCCGCATACTTCAATGACTCGCAGCGCCAAGCCACAAAGGATGCTGGTGTCATTGCCGGTCTTAATGTTATGAGAATAATCAATGAGCCGACTGCTGCTGCCATCGCCTATGGCCTTGACAAAAAGGCTTCCAGCGTAGGTGAGAAAAATGTTCTCATTTTCGACTTGGGCGGTGGGACTTTCGATGTCTCTCTCCTCACCATCGAAGAGGGTATTTTTGAAGTCAAGGCAACTGCAGGAGACACTCATCTTGGTGGTGAGGATTTTGACAATCGCATGGTTAACCACTTTGTTCAGGAATTTAAGAGGAAAAATAAGAAAGATATCAGCAACAATCCCAGAGCTCTTAGGAGATTGAGGACTGCTTGTGAAAGAGCAAAGAGAACTCTATCTTCGACTGCTCAAACCACCATCGAAATTGATTCTCTATACGAGGGCATTGATTTCTACACCACCATCACTCGTGCCAGGTTCGAGGAGCTTAACATGGATCTATTCAGGAAGTGCATGGAACCTGTGGAGAAGTGCTTGAGGGATGCAAAGATGGATAAGAGCACTGTTCATGATGTGGTTTTGGTTGGAGGATCCACTAGGATTCCAAAGGTGCAGCAGCTGTTGCAGGACTTCTTCAATGGGAAGGAGCTCTGCAAGAGCATCAATCCCGATGAGGCTGTTGCCTATGGTGCCGCTGTCCAAGCTGCCATTTTGAGCGGTGAGGGCAACGAGAAGGTTCAGGACCTCCTCCTGCTCGATGTGACTCCTCTCTCTCTTGGTCTCGAGACTGCTGGTGGTGTCATGACAGTCTTGATTCCAAGGAACACCACCATCCCTACCAAGAAGGAGCAGGTCTTCTCGACCTACTCAGACAATCAGCCTGGTGTCTTGATCCAGGTATATGAAGGTGAGAGGACTAGAACAAGGGACAACAATCTGCTCGGCAAATTTGAGCTCTCTGGCATACCACCTGCTCCCAGGGGTGTTCCTCAGATTACTGTTTGCTTCGACATTGATGCTAATGGTATTCTGAATGTTTCTGCTGAGGATAAAACAACTGGGCAGAAGAATAAGATCACAATCACCAATGACAAGGGCCGGCTGAGCAAGGAAGAGATTGAGAAGATGGTTCAGGAAGCGGAGAAGTATAAATCTGAGGATGAGGAACACAAGAAGAAGGTGGAGGCCAAAAACACATTGGAGAATTATGCTTACAACATGAGGAACACCATCAAGGATGAGAAGATTGCCTCGAAGCTTGCTTCTGATGACAAGAAGAAGATTGAAGATGCGATTGATCAGGCCATCCAGTGGCTTGAAAGTAATCAGTTGGCGGAGGCTGATGAGTTTGATGACAAGATGAAGGAATTGGAGGGCATCTGCAACCCCATCATTGCCAAGATGTACCAGGGAGCTGGACCTGATATGGGTGGAATGTCTGATGATATTCCAACTGGTGGTGGTAGTGGTGCTGGTCCCAAGATTGAAGAGGTCGATTAAAATTTTAAACTTATAGTTATATCGCAACTTGTTTGGATTCACTTTACTGCAGACTTATTTTCATTTGTTCTCGTGTCTCTTCCTTTTGAAAAACTTGATATTAGGTGTTTGTTGTGCACGGCCTAAAGTTTAGGCCGTGTTTGCTCGTCTTTGACAATTTTTATTCTATGGTTATATCGTTTTGTGTTTTACCATATTTTAGTAATGTTATGGATTTCTGCTTTATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequences View:[Contig0340](Singleton Sequence)

Contig0340 2301  bases 
GCTCTGTAGACCTCATTCTGAAACCCTAACTAGCTGCCGTCGCAACATCTCCCTCTCTCTTTTATTTTCTCTGCTCTCAGCTCTCAATCCTCTAGATATGGCCGGAAAGGGTGAGGGCCCTGCGATTGGTATTGATCTAGGTACAACGTACTCTTGCGTCGGAGTATGGCAGCACGATCGGGTCGAAATCATCGCAAACGACCAAGGTAACCGTACGACCCCGTCGTATGTTGCGTTCACCGACACCGAGCGGCTGATCGGCGATGCTGCCAAGAATCAGGTCGCTATGAATCCCATCAACACCGTCTTTGATGCCAAGCGATTGATTGGTAGGCGGTATACTGATGCTTCAGTACAGAGTGATATCAAGCTTTGGCCCTTCAAAGTTATTCCTGGACCTGGAGACAAGCCCATGATTGTTGTCCAGTACAAGGGAGAAGAAAAGCAGTTTGCAGCTGAAGAAATCTCATCAATGGTTCTAATTAAGATGCGTGAGATTGCTGAGGCCTATTTAGGATCCTCTGTAAAGAACGCTGTTGTCACTGTTCCCGCATACTTCAATGACTCGCAGCGCCAAGCCACAAAGGATGCTGGTGTCATTGCCGGTCTTAATGTTATGAGAATAATCAATGAGCCGACTGCTGCTGCCATCGCCTATGGCCTTGACAAAAAGGCTTCCAGCGTAGGTGAGAAAAATGTTCTCATTTTCGACTTGGGCGGTGGGACTTTCGATGTCTCTCTCCTCACCATCGAAGAGGGTATTTTTGAAGTCAAGGCAACTGCAGGAGACACTCATCTTGGTGGTGAGGATTTTGACAATCGCATGGTTAACCACTTTGTTCAGGAATTTAAGAGGAAAAATAAGAAAGATATCAGCAACAATCCCAGAGCTCTTAGGAGATTGAGGACTGCTTGTGAAAGAGCAAAGAGAACTCTATCTTCGACTGCTCAAACCACCATCGAAATTGATTCTCTATACGAGGGCATTGATTTCTACACCACCATCACTCGTGCCAGGTTCGAGGAGCTTAACATGGATCTATTCAGGAAGTGCATGGAACCTGTGGAGAAGTGCTTGAGGGATGCAAAGATGGATAAGAGCACTGTTCATGATGTGGTTTTGGTTGGAGGATCCACTAGGATTCCAAAGGTGCAGCAGCTGTTGCAGGACTTCTTCAATGGGAAGGAGCTCTGCAAGAGCATCAATCCCGATGAGGCTGTTGCCTATGGTGCCGCTGTCCAAGCTGCCATTTTGAGCGGTGAGGGCAACGAGAAGGTTCAGGACCTCCTCCTGCTCGATGTGACTCCTCTCTCTCTTGGTCTCGAGACTGCTGGTGGTGTCATGACAGTCTTGATTCCAAGGAACACCACCATCCCTACCAAGAAGGAGCAGGTCTTCTCGACCTACTCAGACAATCAGCCTGGTGTCTTGATCCAGGTATATGAAGGTGAGAGGACTAGAACAAGGGACAACAATCTGCTCGGCAAATTTGAGCTCTCTGGCATACCACCTGCTCCCAGGGGTGTTCCTCAGATTACTGTTTGCTTCGACATTGATGCTAATGGTATTCTGAATGTTTCTGCTGAGGATAAAACAACTGGGCAGAAGAATAAGATCACAATCACCAATGACAAGGGCCGGCTGAGCAAGGAAGAGATTGAGAAGATGGTTCAGGAAGCGGAGAAGTATAAATCTGAGGATGAGGAACACAAGAAGAAGGTGGAGGCCAAAAACACATTGGAGAATTATGCTTACAACATGAGGAACACCATCAAGGATGAGAAGATTGCCTCGAAGCTTGCTTCTGATGACAAGAAGAAGATTGAAGATGCGATTGATCAGGCCATCCAGTGGCTTGAAAGTAATCAGTTGGCGGAGGCTGATGAGTTTGATGACAAGATGAAGGAATTGGAGGGCATCTGCAACCCCATCATTGCCAAGATGTACCAGGGAGCTGGACCTGATATGGGTGGAATGTCTGATGATATTCCAACTGGTGGTGGTAGTGGTGCTGGTCCCAAGATTGAAGAGGTCGATTAAAATTTTAAACTTATAGTTATATCGCAACTTGTTTGGATTCACTTTACTGCAGACTTATTTTCATTTGTTCTCGTGTCTCTTCCTTTTGAAAAACTTGATATTAGGTGTTTGTTGTGCACGGCCTAAAGTTTAGGCCGTGTTTGCTCGTCTTTGACAATTTTTATTCTATGGTTATATCGTTTTGTGTTTTACCATATTTTAGTAATGTTATGGATTTCTGCTTTATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002332589.1	predicted protein	Populus trichocarpa	648	1176 bits (3043)	0.0	594/648 (91%)	612/648 (94%), Gaps = 1/648 (0%)	+2

KEGG Pathway	GO
Contig0340[3 Pathway]	Contig0340[60 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Cellular Processes	Transport and Catabolism	04144	Endocytosis	[PATH:ath04144]	Contig0340	AT3G12580	FPTEVCPM
Genetic Information Processing	Folding, Sorting and Degradation	04141	Protein processing in endoplasmic reticulum	[PATH:ath04141]	Contig0340	AT3G12580	FPTEVCPM
Genetic Information Processing	Transcription	03040	Spliceosome	[PATH:ath03040]	Contig0340	AT3G12580	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G12580	AT3G12580	cell wall	GO:0005618	cell wall
AT3G12580	AT3G12580	mitochondrion	GO:0005739	mitochondria
AT3G12580	AT3G12580	plasma membrane	GO:0005886	plasma membrane
AT3G12580	AT3G12580	plasma membrane	GO:0005886	plasma membrane
AT3G12580	AT3G12580	plasma membrane	GO:0005886	plasma membrane
AT3G12580	AT3G12580	ATP binding	GO:0005524	nucleotide binding
AT3G12580	AT3G12580	response to cadmium ion	GO:0046686	other biological processes
AT3G12580	AT3G12580	cytosol	GO:0005829	cytosol
AT3G12580	AT3G12580	response to heat	GO:0009408	response to stress
AT3G12580	AT3G12580	response to heat	GO:0009408	response to stress
AT3G12580	AT3G12580	response to heat	GO:0009408	response to abiotic or biotic stimulus
AT3G12580	AT3G12580	response to heat	GO:0009408	response to abiotic or biotic stimulus
AT3G12580	AT3G12580	protein folding	GO:0006457	protein metabolism
AT3G12580	AT3G12580	protein folding	GO:0006457	other cellular processes
AT3G12580	AT3G12580	protein folding	GO:0006457	other metabolic processes
AT3G12580	AT3G12580	response to bacterium	GO:0009617	response to abiotic or biotic stimulus
AT3G12580	AT3G12580	response to high light intensity	GO:0009644	response to abiotic or biotic stimulus
AT3G12580	AT3G12580	response to virus	GO:0009615	response to abiotic or biotic stimulus
AT3G12580	AT3G12580	response to temperature stimulus	GO:0009266	response to abiotic or biotic stimulus
AT3G12580	AT3G12580	response to hydrogen peroxide	GO:0042542	response to stress
AT3G12580	AT3G12580	cell wall	GO:0005618	cell wall
AT3G12580	AT3G12580	mitochondrion	GO:0005739	mitochondria
AT3G12580	AT3G12580	plasma membrane	GO:0005886	plasma membrane
AT3G12580	AT3G12580	plasma membrane	GO:0005886	plasma membrane
AT3G12580	AT3G12580	plasma membrane	GO:0005886	plasma membrane
AT3G12580	AT3G12580	ATP binding	GO:0005524	nucleotide binding
AT3G12580	AT3G12580	response to cadmium ion	GO:0046686	other biological processes
AT3G12580	AT3G12580	cytosol	GO:0005829	cytosol
AT3G12580	AT3G12580	response to heat	GO:0009408	response to stress
AT3G12580	AT3G12580	response to heat	GO:0009408	response to stress
AT3G12580	AT3G12580	response to heat	GO:0009408	response to abiotic or biotic stimulus
AT3G12580	AT3G12580	response to heat	GO:0009408	response to abiotic or biotic stimulus
AT3G12580	AT3G12580	protein folding	GO:0006457	protein metabolism
AT3G12580	AT3G12580	protein folding	GO:0006457	other cellular processes
AT3G12580	AT3G12580	protein folding	GO:0006457	other metabolic processes
AT3G12580	AT3G12580	response to bacterium	GO:0009617	response to abiotic or biotic stimulus
AT3G12580	AT3G12580	response to high light intensity	GO:0009644	response to abiotic or biotic stimulus
AT3G12580	AT3G12580	response to virus	GO:0009615	response to abiotic or biotic stimulus
AT3G12580	AT3G12580	response to temperature stimulus	GO:0009266	response to abiotic or biotic stimulus
AT3G12580	AT3G12580	response to hydrogen peroxide	GO:0042542	response to stress
AT3G12580	AT3G12580	cell wall	GO:0005618	cell wall
AT3G12580	AT3G12580	mitochondrion	GO:0005739	mitochondria
AT3G12580	AT3G12580	plasma membrane	GO:0005886	plasma membrane
AT3G12580	AT3G12580	plasma membrane	GO:0005886	plasma membrane
AT3G12580	AT3G12580	plasma membrane	GO:0005886	plasma membrane
AT3G12580	AT3G12580	ATP binding	GO:0005524	nucleotide binding
AT3G12580	AT3G12580	response to cadmium ion	GO:0046686	other biological processes
AT3G12580	AT3G12580	cytosol	GO:0005829	cytosol
AT3G12580	AT3G12580	response to heat	GO:0009408	response to stress
AT3G12580	AT3G12580	response to heat	GO:0009408	response to stress
AT3G12580	AT3G12580	response to heat	GO:0009408	response to abiotic or biotic stimulus
AT3G12580	AT3G12580	response to heat	GO:0009408	response to abiotic or biotic stimulus
AT3G12580	AT3G12580	protein folding	GO:0006457	protein metabolism
AT3G12580	AT3G12580	protein folding	GO:0006457	other cellular processes
AT3G12580	AT3G12580	protein folding	GO:0006457	other metabolic processes
AT3G12580	AT3G12580	response to bacterium	GO:0009617	response to abiotic or biotic stimulus
AT3G12580	AT3G12580	response to high light intensity	GO:0009644	response to abiotic or biotic stimulus
AT3G12580	AT3G12580	response to virus	GO:0009615	response to abiotic or biotic stimulus
AT3G12580	AT3G12580	response to temperature stimulus	GO:0009266	response to abiotic or biotic stimulus
AT3G12580	AT3G12580	response to hydrogen peroxide	GO:0042542	response to stress

Gene Network Informations
Gene Network	Interact with..
Contig0340[interact with..]	FPTEVCPM040_E09_PDNR-F FPTEVCPM071_C04_PDNR-F FPTEVCPM066_D02_PDNR-F FPTEVCPM065_E09_PDNR-F Contig0340 FPTEVCPM074_F10_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FPTEVCPM040_E09_PDNR-F	1067	ref	XP_002529996.1	DNA-directed RNA polymerase I subunit, putative	Ricinus communis	1159	424 bits (1089)	e-116	207/299 (69%)	244/299 (81%), Gaps = 1/299 (0%)	+1
FPTEVCPM071_C04_PDNR-F	1140	ref	NP_001151620.1	dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit	Zea mays	623	406 bits (1044)	e-111	205/344 (59%)	262/344 (76%), Gaps = 5/344 (1%)	+2
FPTEVCPM066_D02_PDNR-F	960	ref	XP_002278126.1	PREDICTED: hypothetical protein	Vitis vinifera	235	411 bits (1056)	e-113	209/223 (93%)	217/223 (97%)	+3
FPTEVCPM065_E09_PDNR-F	1085	ref	XP_002277029.1	PREDICTED: similar to AtRPN1a/RPN1A (26S proteasome regulatory subunit S2 1A); binding	Vitis vinifera	890	402 bits (1032)	e-128	203/290 (70%)	232/290 (80%)	+1
Contig0340	2301	ref	XP_002332589.1	predicted protein	Populus trichocarpa	648	1176 bits (3043)	0.0	594/648 (91%)	612/648 (94%), Gaps = 1/648 (0%)	+2
FPTEVCPM074_F10_PDNR-F	1156	gb	AAN86276.1	cell-autonomous heat shock cognate protein 70	Cucurbita maxima	650	357 bits (916)	e-152	181/210 (86%)	186/210 (88%)	+1