Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	FPTEVCPM065_E09_PDNR-F	1085

Contig Map:

(ProjectName=FPTEVCPM
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FPTEVCPM065_E09_PDNR-F](Singleton Sequence)

FPTEVCPM065_E09_PDNR-F 1085  bases 
GACAAGTTTCTTCACAGCAATGATAATCATGTTGTTGCGGGAGCTTTGCTTGGTGTTGGCATTGTCAACTGTGGCATCAGAAATGATTGTGATCCTGCATTAGCCCTTTTAGGCGATTTCATTGAAAAAGATGATACAATTATCAGAATTGGGGCAATTTTGGGTCTTGGCATTGCATATGCCGGGACAAACAAAGATGACCTAAGAGTCCGCCTTACTAGCATTCTGGGAGATTCAAAGTCACCCCTGGAGGTCCTTGTATTTTCTGCCATTACATTGGGGCTTGTCCATGTTGGTTCCTGCAATGAAGATATTGCTCAAACAATCATTTTGGCAATAATGGAGCGCAGTGAAACTGAATTGGGTGAACCACTTACTCGCTTGCTTCCTGTAGCTCTTGGTCTTCTATACCTTGGCAAGCAGGATAGCGTTGAGGCTACTGCAGAGGTCTCCAGGACATTTAATGAAAAGATTCGGAAATATTGCGATGTTACACTTTTATCCATGGCTTATGCTGGGACTGGGAATGTTCTCAAGGTTCAAAAGTTATTGGGCTATTGTGCACAACATCTTGACAAGGGTGACGTGCATCAAGGCCCTGCAGTCCTTGGCATTGCTTTGGTCGCCATGGCAGAAGAATTGGGCCTTGAAATGTCTATTAGATCACTGGAACATCTTCTACAATACGGGGAGCAGAATATCAGGCGGGCTGTACCTTTGGCCCTTGGTATTTTATGCATATCGAACCCTAAGGTTAATGTCATGGACACATTAAGCCGACTGAGTCGTGATGCAGATACTGATGTTTCTATGGCTGCGATAATATCATTGGGCTTGATAGGTGCTGGAACCAATAATGCACGAATAGCCCGGTATGCTCCGTAATCTTTCAAGTTATTACTACAAAGAAGCTGGCCACCTATTCTGCGTTAGGATAGCTCAAGGTCTTGTGCACCTCGGAAAGGGGTTATTGACTCTATCTCCCTATCATTCAGATCGGTTTCTTCTATCTCGACGGCACTCGCGATAGTGACGTCCTGCATGCTTGTCTTGATATGAATCATCATTCTTGGGGAGTATCCCTA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002277029.1	PREDICTED: similar to AtRPN1a/RPN1A (26S proteasome regulatory subunit S2 1A); binding	Vitis vinifera	890	402 bits (1032)	e-128	203/290 (70%)	232/290 (80%)	+1

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[12 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	03050	Proteasome	[PATH:ath03050]	FPTEVCPM065_E09_PDNR-F	AT2G20580	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT2G20580	AT2G20580	plasma membrane	GO:0005886	plasma membrane
AT2G20580	AT2G20580	binding	GO:0005488	other binding
AT2G20580	AT2G20580	enzyme regulator activity	GO:0030234	other molecular functions
AT2G20580	AT2G20580	"proteasome regulatory particle, base subcomplex"	GO:0008540	other intracellular components
AT2G20580	AT2G20580	"proteasome regulatory particle, base subcomplex"	GO:0008540	other intracellular components
AT2G20580	AT2G20580	nucleus	GO:0005634	nucleus
AT2G20580	AT2G20580	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT2G20580	AT2G20580	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT2G20580	AT2G20580	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT2G20580	AT2G20580	protein catabolic process	GO:0030163	protein metabolism
AT2G20580	AT2G20580	proteasome complex	GO:0000502	other intracellular components
AT2G20580	AT2G20580	regulation of cell cycle	GO:0051726	other cellular processes

Gene Network Informations
Gene Network	Interact with..
FPTEVCPM065_E09_PDNR-F[interact with..]	FPTEVCPM077_A12_PDNR-F FPTEVCPM032_A12_PDNR-F Contig0793 FPTEVCPM073_G06_PDNR-F FPTEVCPM065_E09_PDNR-F Contig1199 FPTEVCPM001_A08_pDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FPTEVCPM077_A12_PDNR-F	968	ref	XP_002513958.1	cytochrome C oxidase polypeptide vib, putative	Ricinus communis	191	173 bits (438)	3e-41	99/211 (46%)	120/211 (56%), Gaps = 3/211 (1%)	+2
FPTEVCPM032_A12_PDNR-F	1042	sp	O64982.1	PRS7_PRUPE RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S proteasome subunit 7; AltName: Full=26S proteasome		425	507 bits (1305)	e-144	249/265 (93%)	257/265 (96%)	+3
Contig0793	1134	emb	CAA56354.1	NADP dependent malic enzyme	Phaseolus vulgaris	589	573 bits (1477)	e-161	291/370 (78%)	316/370 (85%)	+2
FPTEVCPM073_G06_PDNR-F	1147	emb	CBI37752.1	unnamed protein product	Vitis vinifera	291	236 bits (602)	4e-60	134/266 (50%)	155/266 (58%), Gaps = 6/266 (2%)	+1
FPTEVCPM065_E09_PDNR-F	1085	ref	XP_002277029.1	PREDICTED: similar to AtRPN1a/RPN1A (26S proteasome regulatory subunit S2 1A); binding	Vitis vinifera	890	402 bits (1032)	e-128	203/290 (70%)	232/290 (80%)	+1
Contig1199	1058	ref	XP_002527995.1	proteasome subunit beta type 6,9, putative	Ricinus communis	231	394 bits (1012)	e-108	198/231 (85%)	211/231 (91%)	+3
FPTEVCPM001_A08_pDNR-F	1125	ref	XP_002326923.1	predicted protein	Populus trichocarpa	312	521 bits (1341)	e-148	262/289 (90%)	267/289 (92%), Gaps = 1/289 (0%)	+1