Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	EICPM004-A9_pDNR-R	997

Contig Map:

(ProjectName=FEICP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[EICPM004-A9_pDNR-R](Singleton Sequence)

EICPM004-A9_pDNR-R 997  bases 
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATACATAAAATCTACAATATCCAAACGTTGATAAATCAAAACGGGAAAACAAAACCCCAACCAAAAAAATCAAAACGTTGATAAAGTTTATAGACCCCTCTTAACAATATCCCCCCCCTAAAATCTACAACATGCGGGGGAAATAAAATGGGGTCACCAAAAAAATTCATAAACCTAACAGGAGGTGCGGACATGGGTACATAAATATAGCCCGTCATTGGGCGAAAAAACCAAATCGACGCTCCAACAAAAAAATCACAGCCCCCCCCGTCCAAAATGTTGAGCCCCCTCTCCAATATCACCCCCCCCGGAATCTTGCAAGCGAACCCCATCAAGTTTTTGCTTCTCAATTTCTATAGCATTGGCCACCCTCTGATAAAATTTGATAGCACCGGGAGACTCAACTGTGAAAATGAAACTGTCTTCTTTGGGAGAGATTTCAATCAGACCTGGGTTTCCCATTGCCTCTGCCTTTTTTATCACTTCTTCATCGCAAGTGTATGCTTCAGGATCAAGCACCCTCACCTGATATGTATTAGGATCAATGTCAAAAACTTTGGGGGGGGTGCTTTCAATCCAACTTCTTTTCTCATCGAGCGTGAGGGTGTCCATCACTTCTTCATTAATATGAATCTCTCGTGCATACATAAATGTGACAGTGGCAGCACGTGACCACTTTGCATGATCCTTACCAATTCTCCTTCTTGCGATTGCGCTTAATCTCAGATCTTGTCCACGTCGCAACATTACAATGATTATGCGCCTCTGGGCTTGAGAAACAAAACGCCAGTTTCAGAGACGAGGGTGCGGGCGGCAACACCTACTGGGACGACACTGGGCTTCCCTGCTGCGAGGTCGTTGCTCGCTACATCTAAGGGCTGGTCGGAGTCGCAGCGGACGTTAGATGGGACTCAACAGAGAATACTCGCATTGGGCATCGCATCAAAGCATCGCAATCTCTAGAGA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002518700.1	DNA-directed RNA polymerase II subunit, putative	Ricinus communis	318	225 bits (573)	5e-59	119/172 (69%)	135/172 (78%)	+1

KEGG Pathway	GO
NoContigFind[3 Pathway]	NoContigFind[76 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Transcription	03020	RNA polymerase	[PATH:ath03020]	EICPM004-A9_pDNR-R	AT2G15430	FEICP
Metabolism	Nucleotide Metabolism	00230	Purine metabolism	[PATH:ath00230]	EICPM004-A9_pDNR-R	AT2G15430	FEICP
Metabolism	Nucleotide Metabolism	00240	Pyrimidine metabolism	[PATH:ath00240]	EICPM004-A9_pDNR-R	AT2G15430	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT2G15430	AT2G15430	DNA binding	GO:0003677	DNA or RNA binding
AT2G15430	AT2G15430	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT2G15430	AT2G15430	transcription	GO:0006350	transcription
AT2G15430	AT2G15430	protein dimerization activity	GO:0046983	protein binding
AT2G15430	AT2G15430	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT2G15430	AT2G15430	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT2G15430	AT2G15430	cytoplasm	GO:0005737	other cytoplasmic components
AT2G15430	AT2G15430	cytoplasm	GO:0005737	other cytoplasmic components
AT2G15430	AT2G15430	nucleolus	GO:0005730	nucleus
AT2G15430	AT2G15430	nucleolus	GO:0005730	nucleus
AT2G15430	AT2G15430	nucleolus	GO:0005730	other intracellular components
AT2G15430	AT2G15430	nucleolus	GO:0005730	other intracellular components
AT2G15430	AT2G15430	nucleus	GO:0005634	nucleus
AT2G15430	AT2G15430	nucleus	GO:0005634	nucleus
AT2G15430	AT2G15430	DNA binding	GO:0003677	DNA or RNA binding
AT2G15430	AT2G15430	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT2G15430	AT2G15430	transcription	GO:0006350	transcription
AT2G15430	AT2G15430	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT2G15430	AT2G15430	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT2G15430	AT2G15430	DNA binding	GO:0003677	DNA or RNA binding
AT2G15430	AT2G15430	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT2G15430	AT2G15430	transcription	GO:0006350	transcription
AT2G15430	AT2G15430	protein dimerization activity	GO:0046983	protein binding
AT2G15430	AT2G15430	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT2G15430	AT2G15430	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT2G15430	AT2G15430	cytoplasm	GO:0005737	other cytoplasmic components
AT2G15430	AT2G15430	cytoplasm	GO:0005737	other cytoplasmic components
AT2G15430	AT2G15430	nucleolus	GO:0005730	nucleus
AT2G15430	AT2G15430	nucleolus	GO:0005730	nucleus
AT2G15430	AT2G15430	nucleolus	GO:0005730	other intracellular components
AT2G15430	AT2G15430	nucleolus	GO:0005730	other intracellular components
AT2G15430	AT2G15430	nucleus	GO:0005634	nucleus
AT2G15430	AT2G15430	nucleus	GO:0005634	nucleus
AT2G15430	AT2G15430	DNA binding	GO:0003677	DNA or RNA binding
AT2G15430	AT2G15430	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT2G15430	AT2G15430	transcription	GO:0006350	transcription
AT2G15430	AT2G15430	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT2G15430	AT2G15430	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT2G15430	AT2G15430	DNA binding	GO:0003677	DNA or RNA binding
AT2G15430	AT2G15430	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT2G15430	AT2G15430	transcription	GO:0006350	transcription
AT2G15430	AT2G15430	protein dimerization activity	GO:0046983	protein binding
AT2G15430	AT2G15430	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT2G15430	AT2G15430	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT2G15430	AT2G15430	cytoplasm	GO:0005737	other cytoplasmic components
AT2G15430	AT2G15430	cytoplasm	GO:0005737	other cytoplasmic components
AT2G15430	AT2G15430	nucleolus	GO:0005730	nucleus
AT2G15430	AT2G15430	nucleolus	GO:0005730	nucleus
AT2G15430	AT2G15430	nucleolus	GO:0005730	other intracellular components
AT2G15430	AT2G15430	nucleolus	GO:0005730	other intracellular components
AT2G15430	AT2G15430	nucleus	GO:0005634	nucleus
AT2G15430	AT2G15430	nucleus	GO:0005634	nucleus
AT2G15430	AT2G15430	DNA binding	GO:0003677	DNA or RNA binding
AT2G15430	AT2G15430	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT2G15430	AT2G15430	transcription	GO:0006350	transcription
AT2G15430	AT2G15430	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT2G15430	AT2G15430	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components
AT2G15430	AT2G15430	DNA binding	GO:0003677	DNA or RNA binding
AT2G15430	AT2G15430	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT2G15430	AT2G15430	transcription	GO:0006350	transcription
AT2G15430	AT2G15430	protein dimerization activity	GO:0046983	protein binding
AT2G15430	AT2G15430	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT2G15430	AT2G15430	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT2G15430	AT2G15430	cytoplasm	GO:0005737	other cytoplasmic components
AT2G15430	AT2G15430	cytoplasm	GO:0005737	other cytoplasmic components
AT2G15430	AT2G15430	nucleolus	GO:0005730	nucleus
AT2G15430	AT2G15430	nucleolus	GO:0005730	nucleus
AT2G15430	AT2G15430	nucleolus	GO:0005730	other intracellular components
AT2G15430	AT2G15430	nucleolus	GO:0005730	other intracellular components
AT2G15430	AT2G15430	nucleus	GO:0005634	nucleus
AT2G15430	AT2G15430	nucleus	GO:0005634	nucleus
AT2G15430	AT2G15430	DNA binding	GO:0003677	DNA or RNA binding
AT2G15430	AT2G15430	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT2G15430	AT2G15430	transcription	GO:0006350	transcription
AT2G15430	AT2G15430	DNA-directed RNA polymerase IV complex	GO:0000418	nucleus
AT2G15430	AT2G15430	DNA-directed RNA polymerase IV complex	GO:0000418	other intracellular components

Gene Network Informations
Gene Network	Interact with..
EICPM004-A9_pDNR-R[interact with..]	Contig3110 Contig2405 EICPM056-H01_pDNR-R EICPS054_B10_pDNR-F EICPM004-A9_pDNR-R EICPS-D4_pDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig3110	1030	gb	ACU16597.1	unknown	Glycine max	212	279 bits (714)	3e-73	145/189 (76%)	150/189 (79%)	+2
Contig2405	1041	ref	XP_002441353.1	hypothetical protein SORBIDRAFT_09g025080	Sorghum bicolor	267	396 bits (1018)	e-108	197/265 (74%)	221/265 (83%), Gaps = 7/265 (2%)	+3
EICPM056-H01_pDNR-R	1030	ref	XP_002441353.1	hypothetical protein SORBIDRAFT_09g025080	Sorghum bicolor	267	256 bits (654)	3e-66	129/180 (71%)	147/180 (81%), Gaps = 3/180 (1%)	+2
EICPS054_B10_pDNR-F	901	ref	NP_001044390.1	Os01g0772200	Oryza sativa (japonica cultivar-group)	117	72.8 bits (177)	5e-11	32/35 (91%)	33/35 (94%)	+1
EICPM004-A9_pDNR-R	997	ref	XP_002518700.1	DNA-directed RNA polymerase II subunit, putative	Ricinus communis	318	225 bits (573)	5e-59	119/172 (69%)	135/172 (78%)	+1
EICPS-D4_pDNR-F	936	sp	Q42877.1	RPB2_SOLLC RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA polymerase II subunit B2; Short=RNA polymerase II subunit		1191	414 bits (1063)	e-114	198/208 (95%)	205/208 (98%)	+3