Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	Contig3110	1030

Contig Map:

(ProjectName=FEICP SequenceName=Contig3110):
EICPS030_G04_pDNR-F:
EICPM011-D12_pDNR-F:
EICPM011_D12_pDNR-R:

Sequences View:[Contig3110](Contig Seguence)

1030 bases 
CAAAGATTTGTATTTATATCGTGTCATTGTGGGGATTCGGCCATTACGGCCGGGATATAAGAGGCGCTGYATCTCTGMGTGCTTCCCTTCATTTTCTCTACCTCCAMGCARGAGAGAGTGGMCAAGGCGGCGGGACAATTAAGCTATGGTTTCGCTTAAGCTCCAGAAGCGGCTCGCGGCGAGCGTGCTTAGCTGCGGGAAGGGTAAGGTCTGGCTGGATCCCAATGAGGTCAGTGAGATATCCATGGCCAACTCTCGGCAAAACATTAGAAAACTGGTTAAAGATGGTTTTATCATAAAGAAACCTATGAAGATTCACTCTCGATCCCGTGCAAGACGCATGGCGGAAGCAAAAAGGAAGGGGCGCCACTCTGGATATGGTAAGCGCAAGGGTACTCGAGAAGCTAGGCTCCCCACAAAGGTTTTGTGGATGAGAAGGATGAGGGTTTTGAGGCGTTTGCTTAGGAAGTATCGTGATGCCAAGAAAATTGACAAGCACATGTACCATGATATGTACATGAAGGTAAAAGGTAATGTATTTAAAAACAAGAGAGTCTTGATGGAGAGTATTCACAAATCTAAGGCCGAAAAGGCAAGAGAAAAGACTTTGTCGGACCAATTTGAGGCTAAGAGGGCAAAGAGCAAAGCAAGCAGGGAGAGGAAGATTGCTAGAAGGGAGGAAAGACTTGCTCAGGGCCCTGGAGAGAAAGTAAAAGCACCTGCTGCAGCAGCACCACCACCCCAACCCGCAGAGTCTGCTCCCAAAAGGACTAAGAAGTAAAGGACAGCCATTAACTCCAAAAGTAAGCTGAATTCTGAAGAGACTATGAAAATCAGTGGAACATCGTTGTTTAAGAGTTAAAAAAAACTTTGTGAGTGTTGTCTTGTTTTTGTGCTAACTTTTAGAAATAAACTCGAGAGCGTGTTTGCATGTTTATATTGTGCTGTTGAATTTTAACTTTTCAGTTCCCATATGTCTAAACTTGATTCTTGTTCTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequences View:[Contig3110](Singleton Sequence)

Contig3110 1030  bases 
CAAAGATTTGTATTTATATCGTGTCATTGTGGGGATTCGGCCATTACGGCCGGGATATAAGAGGCGCTGYATCTCTGMGTGCTTCCCTTCATTTTCTCTACCTCCAMGCARGAGAGAGTGGMCAAGGCGGCGGGACAATTAAGCTATGGTTTCGCTTAAGCTCCAGAAGCGGCTCGCGGCGAGCGTGCTTAGCTGCGGGAAGGGTAAGGTCTGGCTGGATCCCAATGAGGTCAGTGAGATATCCATGGCCAACTCTCGGCAAAACATTAGAAAACTGGTTAAAGATGGTTTTATCATAAAGAAACCTATGAAGATTCACTCTCGATCCCGTGCAAGACGCATGGCGGAAGCAAAAAGGAAGGGGCGCCACTCTGGATATGGTAAGCGCAAGGGTACTCGAGAAGCTAGGCTCCCCACAAAGGTTTTGTGGATGAGAAGGATGAGGGTTTTGAGGCGTTTGCTTAGGAAGTATCGTGATGCCAAGAAAATTGACAAGCACATGTACCATGATATGTACATGAAGGTAAAAGGTAATGTATTTAAAAACAAGAGAGTCTTGATGGAGAGTATTCACAAATCTAAGGCCGAAAAGGCAAGAGAAAAGACTTTGTCGGACCAATTTGAGGCTAAGAGGGCAAAGAGCAAAGCAAGCAGGGAGAGGAAGATTGCTAGAAGGGAGGAAAGACTTGCTCAGGGCCCTGGAGAGAAAGTAAAAGCACCTGCTGCAGCAGCACCACCACCCCAACCCGCAGAGTCTGCTCCCAAAAGGACTAAGAAGTAAAGGACAGCCATTAACTCCAAAAGTAAGCTGAATTCTGAAGAGACTATGAAAATCAGTGGAACATCGTTGTTTAAGAGTTAAAAAAAACTTTGTGAGTGTTGTCTTGTTTTTGTGCTAACTTTTAGAAATAAACTCGAGAGCGTGTTTGCATGTTTATATTGTGCTGTTGAATTTTAACTTTTCAGTTCCCATATGTCTAAACTTGATTCTTGTTCTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ACU16597.1	unknown	Glycine max	212	279 bits (714)	3e-73	145/189 (76%)	150/189 (79%)	+2

KEGG Pathway	GO
Contig3110[1 Pathway]	Contig3110[20 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Translation	03010	Ribosome	[PATH:ath03010]	Contig3110	AT1G02780	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G02780	AT1G02780	ribosome	GO:0005840	ribosome
AT1G02780	AT1G02780	structural constituent of ribosome	GO:0003735	structural molecule activity
AT1G02780	AT1G02780	translation	GO:0006412	protein metabolism
AT1G02780	AT1G02780	translation	GO:0006412	other cellular processes
AT1G02780	AT1G02780	translation	GO:0006412	other metabolic processes
AT1G02780	AT1G02780	ribosome biogenesis	GO:0042254	cell organization and biogenesis
AT1G02780	AT1G02780	embryo development ending in seed dormancy	GO:0009793	developmental processes
AT1G02780	AT1G02780	cytosolic large ribosomal subunit	GO:0022625	cytosol
AT1G02780	AT1G02780	cytosolic large ribosomal subunit	GO:0022625	ribosome
AT1G02780	AT1G02780	cytosolic large ribosomal subunit	GO:0022625	other cytoplasmic components
AT1G02780	AT1G02780	cytosolic large ribosomal subunit	GO:0022625	other intracellular components
AT1G02780	AT1G02780	membrane	GO:0016020	other membranes
AT1G02780	AT1G02780	nucleolus	GO:0005730	nucleus
AT1G02780	AT1G02780	nucleolus	GO:0005730	other intracellular components
AT1G02780	AT1G02780	plasma membrane	GO:0005886	plasma membrane
AT1G02780	AT1G02780	structural constituent of ribosome	GO:0003735	structural molecule activity
AT1G02780	AT1G02780	cytosolic ribosome	GO:0022626	cytosol
AT1G02780	AT1G02780	cytosolic ribosome	GO:0022626	ribosome
AT1G02780	AT1G02780	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT1G02780	AT1G02780	cytosolic ribosome	GO:0022626	other intracellular components

Gene Network Informations
Gene Network	Interact with..
Contig3110[interact with..]	EICPS007_E09_pDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
EICPS007_E09_pDNR-F	754	gb	ACU14035.1	unknown	Glycine max	212	228 bits (582)	3e-58	120/161 (74%)	123/161 (76%)	+2