Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	Contig0793	1134

Contig Map:

(ProjectName=FPTEVCPM SequenceName=Contig0793):
FPTEVCPM052_F07_PDNR-F:
FPTEVCPM044_H12_PDNR-F:

Sequences View:[Contig0793](Contig Seguence)

1134 bases 
GGGTATGGGGATTCCCGTGGGCAAGCTTTCTCTATATACCGCCTTAGGAGGTCTTCGCCCATCGGCATGCTTGCCTGTCACAATTGATGTGGGAACAAACAATGAGAAGTTACTGAAAGATGAATTTTATATAGGGTTGAGGCAGAAGCGCGCCACTGGTCAGGAATACGCAGACCTTATGGAAGAATTTATGAGCGCTGTTAAGCAAAACTATGGAGAGAAAGTGCTTATACAGTTTGAAGATTTTGCAAACCATAATGCATTTAGCCTACTTGAAAAGTACAGCAAAACTCATCTTGTCTTCAATGATGATATTCAGGGAACGGCTTCGGTTGTTCTAGCTGGGTTAGTTGCAGCACTGAAGGTGGTTGGTGGTAAATTGTCAAATCATACTTTCTTGTTTCTTGGTGCTGGGGAGGCTGGTACAGGGATAGCAGAACTCATAGCACTTGAGATGTCAAAACAGACAAATACTCCCATTGCTGATTGTCGTAAGAGAATCTGGCTTGTGGACTCTAAGGGCCTGATTGTCAAATCACGTTTTGAAACTCTACAACACTTCAAAAAACCTTGGGCTCATGAACATGAATTTGTTAAGGATCTATCAGAGGCCGTGAAGGTCATCAAGCCAACAGTACTCATCGGATCTTCTGGAGTGGGCAGAACTTTCACAAGAGAAGTAGTTGAGACTATGGCTTCCTTCAATGAGAAACCTATAATCCTAGCTCTATCTAATCCAACATCTCAGTCTGAATGCACTGCTGAGGAAGCTTACACTTGGAGTAAGGGTCGAGCAATATTTGCTAGTGGGAGTCCGTTCAATCCTGTCGAATACGAAGGCAAAACTTTCCTGCCTGGGCAGGCAAACAATGCTTATATATTTCCTGGATTTGGTCTTGGTTTGATAATATCTGGAGCCATCCGTGTACATGATGACATGCTCCTTGCAGCTTCGGAAGCTCTGGCTTCACAGGTGAGACAAGAAAACCCTGAGAACGGATCAATTTATCCGCCTTTCAGGAACATTAGAAAGATTTCAGCTGAAATTGCTGCCAAAGTGCTGCCAAGCATATGAACTTGGTTTGGCTTTTTCATTCTTCCTCGCCCAAAACTTGGTGAAATATTGCAAAAAAG

Sequences View:[Contig0793](Singleton Sequence)

Contig0793 1134  bases 
GGGTATGGGGATTCCCGTGGGCAAGCTTTCTCTATATACCGCCTTAGGAGGTCTTCGCCCATCGGCATGCTTGCCTGTCACAATTGATGTGGGAACAAACAATGAGAAGTTACTGAAAGATGAATTTTATATAGGGTTGAGGCAGAAGCGCGCCACTGGTCAGGAATACGCAGACCTTATGGAAGAATTTATGAGCGCTGTTAAGCAAAACTATGGAGAGAAAGTGCTTATACAGTTTGAAGATTTTGCAAACCATAATGCATTTAGCCTACTTGAAAAGTACAGCAAAACTCATCTTGTCTTCAATGATGATATTCAGGGAACGGCTTCGGTTGTTCTAGCTGGGTTAGTTGCAGCACTGAAGGTGGTTGGTGGTAAATTGTCAAATCATACTTTCTTGTTTCTTGGTGCTGGGGAGGCTGGTACAGGGATAGCAGAACTCATAGCACTTGAGATGTCAAAACAGACAAATACTCCCATTGCTGATTGTCGTAAGAGAATCTGGCTTGTGGACTCTAAGGGCCTGATTGTCAAATCACGTTTTGAAACTCTACAACACTTCAAAAAACCTTGGGCTCATGAACATGAATTTGTTAAGGATCTATCAGAGGCCGTGAAGGTCATCAAGCCAACAGTACTCATCGGATCTTCTGGAGTGGGCAGAACTTTCACAAGAGAAGTAGTTGAGACTATGGCTTCCTTCAATGAGAAACCTATAATCCTAGCTCTATCTAATCCAACATCTCAGTCTGAATGCACTGCTGAGGAAGCTTACACTTGGAGTAAGGGTCGAGCAATATTTGCTAGTGGGAGTCCGTTCAATCCTGTCGAATACGAAGGCAAAACTTTCCTGCCTGGGCAGGCAAACAATGCTTATATATTTCCTGGATTTGGTCTTGGTTTGATAATATCTGGAGCCATCCGTGTACATGATGACATGCTCCTTGCAGCTTCGGAAGCTCTGGCTTCACAGGTGAGACAAGAAAACCCTGAGAACGGATCAATTTATCCGCCTTTCAGGAACATTAGAAAGATTTCAGCTGAAATTGCTGCCAAAGTGCTGCCAAGCATATGAACTTGGTTTGGCTTTTTCATTCTTCCTCGCCCAAAACTTGGTGAAATATTGCAAAAAAG

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
emb	CAA56354.1	NADP dependent malic enzyme	Phaseolus vulgaris	589	573 bits (1477)	e-161	291/370 (78%)	316/370 (85%)	+2

KEGG Pathway	GO
Contig0793[2 Pathway]	Contig0793[54 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Carbohydrate Metabolism	00620	Pyruvate metabolism	[PATH:ath00620]	Contig0793	AT1G79750	FPTEVCPM
Metabolism	Energy Metabolism	00710	Carbon fixation in photosynthetic organisms	[PATH:ath00710]	Contig0793	AT1G79750	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G79750	AT1G79750	chloroplast	GO:0009507	chloroplast
AT1G79750	AT1G79750	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity	GO:0004473	other enzyme activity
AT1G79750	AT1G79750	malic enzyme activity	GO:0004470	other enzyme activity
AT1G79750	AT1G79750	"oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor"	GO:0016652	other enzyme activity
AT1G79750	AT1G79750	zinc ion binding	GO:0008270	other binding
AT1G79750	AT1G79750	fatty acid biosynthetic process	GO:0006633	other cellular processes
AT1G79750	AT1G79750	fatty acid biosynthetic process	GO:0006633	other metabolic processes
AT1G79750	AT1G79750	malate metabolic process	GO:0006108	other cellular processes
AT1G79750	AT1G79750	malate metabolic process	GO:0006108	other metabolic processes
AT1G79750	AT1G79750	malate metabolic process	GO:0006108	other cellular processes
AT1G79750	AT1G79750	malate metabolic process	GO:0006108	other metabolic processes
AT1G79750	AT1G79750	malate metabolic process	GO:0006108	other cellular processes
AT1G79750	AT1G79750	malate metabolic process	GO:0006108	other metabolic processes
AT1G79750	AT1G79750	seed germination	GO:0009845	developmental processes
AT1G79750	AT1G79750	embryo development ending in seed dormancy	GO:0009793	developmental processes
AT1G79750	AT1G79750	protein homodimerization activity	GO:0042803	protein binding
AT1G79750	AT1G79750	cobalt ion binding	GO:0050897	other binding
AT1G79750	AT1G79750	protein homotetramerization	GO:0051289	other biological processes
AT1G79750	AT1G79750	chloroplast	GO:0009507	chloroplast
AT1G79750	AT1G79750	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity	GO:0004473	other enzyme activity
AT1G79750	AT1G79750	malic enzyme activity	GO:0004470	other enzyme activity
AT1G79750	AT1G79750	"oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor"	GO:0016652	other enzyme activity
AT1G79750	AT1G79750	zinc ion binding	GO:0008270	other binding
AT1G79750	AT1G79750	fatty acid biosynthetic process	GO:0006633	other cellular processes
AT1G79750	AT1G79750	fatty acid biosynthetic process	GO:0006633	other metabolic processes
AT1G79750	AT1G79750	malate metabolic process	GO:0006108	other cellular processes
AT1G79750	AT1G79750	malate metabolic process	GO:0006108	other metabolic processes
AT1G79750	AT1G79750	malate metabolic process	GO:0006108	other cellular processes
AT1G79750	AT1G79750	malate metabolic process	GO:0006108	other metabolic processes
AT1G79750	AT1G79750	malate metabolic process	GO:0006108	other cellular processes
AT1G79750	AT1G79750	malate metabolic process	GO:0006108	other metabolic processes
AT1G79750	AT1G79750	seed germination	GO:0009845	developmental processes
AT1G79750	AT1G79750	embryo development ending in seed dormancy	GO:0009793	developmental processes
AT1G79750	AT1G79750	protein homodimerization activity	GO:0042803	protein binding
AT1G79750	AT1G79750	cobalt ion binding	GO:0050897	other binding
AT1G79750	AT1G79750	protein homotetramerization	GO:0051289	other biological processes
AT1G79750	AT1G79750	chloroplast	GO:0009507	chloroplast
AT1G79750	AT1G79750	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity	GO:0004473	other enzyme activity
AT1G79750	AT1G79750	malic enzyme activity	GO:0004470	other enzyme activity
AT1G79750	AT1G79750	"oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor"	GO:0016652	other enzyme activity
AT1G79750	AT1G79750	zinc ion binding	GO:0008270	other binding
AT1G79750	AT1G79750	fatty acid biosynthetic process	GO:0006633	other cellular processes
AT1G79750	AT1G79750	fatty acid biosynthetic process	GO:0006633	other metabolic processes
AT1G79750	AT1G79750	malate metabolic process	GO:0006108	other cellular processes
AT1G79750	AT1G79750	malate metabolic process	GO:0006108	other metabolic processes
AT1G79750	AT1G79750	malate metabolic process	GO:0006108	other cellular processes
AT1G79750	AT1G79750	malate metabolic process	GO:0006108	other metabolic processes
AT1G79750	AT1G79750	malate metabolic process	GO:0006108	other cellular processes
AT1G79750	AT1G79750	malate metabolic process	GO:0006108	other metabolic processes
AT1G79750	AT1G79750	seed germination	GO:0009845	developmental processes
AT1G79750	AT1G79750	embryo development ending in seed dormancy	GO:0009793	developmental processes
AT1G79750	AT1G79750	protein homodimerization activity	GO:0042803	protein binding
AT1G79750	AT1G79750	cobalt ion binding	GO:0050897	other binding
AT1G79750	AT1G79750	protein homotetramerization	GO:0051289	other biological processes

Gene Network Informations
Gene Network	Interact with..
Contig0793[interact with..]	Contig1123 FPTEVCPM033_D11_PDNR-F FPTEVCPM057_A06_PDNR-F FPTEVCPM070_F11_PDNR-F FPTEVCPM081_A03_PDNR-F FPTEVCPM057_F09_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig1123	1596	ref	XP_002513881.1	Homomeric Acetyl-CoA Carboxylase (Hom-ACCase)	Ricinus communis	2259	721 bits (1862)	0.0	367/495 (74%)	415/495 (83%), Gaps = 7/495 (1%)	+3
FPTEVCPM033_D11_PDNR-F	1027	gb	ACF06475.1	ribosomal protein L30	Elaeis guineensis	112	97.1 bits (240)	3e-18	60/110 (54%)	65/110 (59%), Gaps = 36/110 (32%)	+2
FPTEVCPM057_A06_PDNR-F	935	gb	AAC48927.1	lectin	Epipactis helleborine	168	229 bits (585)	2e-58	112/144 (77%)	122/144 (84%)	+3
FPTEVCPM070_F11_PDNR-F	1094	emb	CAA56354.1	NADP dependent malic enzyme	Phaseolus vulgaris	589	382 bits (980)	e-116	206/304 (67%)	227/304 (74%), Gaps = 7/304 (2%)	+3
FPTEVCPM081_A03_PDNR-F	453	ref	XP_002511819.1	malic enzyme, putative	Ricinus communis	602	148 bits (373)	2e-34	71/91 (78%)	82/91 (90%)	+1
FPTEVCPM057_F09_PDNR-F	1111	dbj	BAA24950.1	NADP-malic enzyme	Aloe arborescens	592	464 bits (1193)	e-128	245/350 (70%)	274/350 (78%), Gaps = 7/350 (2%)	+2