Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	FPTEVCPM032_A12_PDNR-F	1042

Contig Map:

(ProjectName=FPTEVCPM
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FPTEVCPM032_A12_PDNR-F](Singleton Sequence)

FPTEVCPM032_A12_PDNR-F 1042  bases 
GGCACCCCACCCCTGCACATCTGTCACCCGTAACCCTCATCTGCCCCTTCCCGCATTACCCCCGCAACCCTAGACGACGAAGCAGTCACGAAACTCTAGACGACGAGGCAGCGAGGAAGCACGGGAGTTGGGCCTCGGTTTTTTTGCTAGTTCTCCGAAAAGTCTTCGCCGTCGTCCCGTCCGCCATGGCACCGGAGCCCGAAGATGAATTGAACGAGAAGAACCCAAAGCCTCTTGACGAGGATGACATCGTCCTGCTCAAAACATATGGTTTAGGACCTTATTCTGCTAGCATCAAGAAGGCGGAGAAGGAAATAAAAGACATGGCAAAAAAGGTCAATGATTTATGTGGAATTAAAGAGTCTGACACTGGGCTGGCTGCACCAAGCCAGTGGGATTTAGTCTCTGACAAGCAAATGATGCAGGAGGAGCAGCCACTTCAGGTTGCCAGATGCACAAAGATAATCAATCCAAATACTGAAGATGCTAAATATGTGATAAATGTTAAGCAAATTGCTAAGTTTGTGGTTGGCCTGGGTGATAGAGTTTCCCCGACAGATATCGAGGAAGGAATGCGTGTGGGGGTTGATAGAAACAAATATCAGATTCAAATTCCTTTGCCTCCGAAGATTGATCCAAGTGTCACAATGATGACTGTGGAGGAGAAGCCAGATGTCACTTACAATGATGTTGGTGGATGCAAGGAGCAGATTGAAAAGATGCGTGAAGTGGTAGAGCTCCCCATGCTTCATCCAGAGAAATTTGTAAAGCTTGGAATTGATCCTCCCAAAGGAGTTCTCTGCTACGGCCCTCCAGGAACTGGCAAAACACTTTTAGCTCGGGCCGTAGCCAACAGAACAGATGCTTGCTTCATCCGTGTCATCGGAAGTGAGCTTGTTCAGAAATATGTTGGAGAAGGGGCTCGGATGGTTCGTGAACTATTTCAGATGGCTCGCTCGAAAAGGCATGCATTGTATTTTTCGATGAAGTGGATGCGATTGGCGGTGCTCGTTTTGATGATGGGGTTGGGGGGGGACAACGA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
sp	O64982.1	PRS7_PRUPE RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S proteasome subunit 7; AltName: Full=26S proteasome		425	507 bits (1305)	e-144	249/265 (93%)	257/265 (96%)	+3

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[9 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	03050	Proteasome	[PATH:ath03050]	FPTEVCPM032_A12_PDNR-F	AT1G53750	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G53750	AT1G53750	"proteasome regulatory particle, base subcomplex"	GO:0008540	other intracellular components
AT1G53750	AT1G53750	nucleus	GO:0005634	nucleus
AT1G53750	AT1G53750	ATPase activity	GO:0016887	hydrolase activity
AT1G53750	AT1G53750	ATPase activity	GO:0016887	hydrolase activity
AT1G53750	AT1G53750	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT1G53750	AT1G53750	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT1G53750	AT1G53750	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT1G53750	AT1G53750	proteasome complex	GO:0000502	other intracellular components
AT1G53750	AT1G53750	plasma membrane	GO:0005886	plasma membrane

Gene Network Informations
Gene Network	Interact with..
FPTEVCPM032_A12_PDNR-F[interact with..]	FPTEVCPM050_D09_PDNR-F Contig0932

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FPTEVCPM050_D09_PDNR-F	1062	ref	XP_002512434.1	26S protease regulatory subunit 6a, putative	Ricinus communis	429	608 bits (1568)	e-172	308/317 (97%)	316/317 (99%), Gaps = 1/317 (0%)	+2
Contig0932	1266	ref	XP_002523664.1	26S protease regulatory subunit 6b, putative	Ricinus communis	415	605 bits (1559)	e-171	318/355 (89%)	330/355 (92%), Gaps = 4/355 (1%)	+1