Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	FPTEVCPM050_D09_PDNR-F	1062

Contig Map:

(ProjectName=FPTEVCPM
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FPTEVCPM050_D09_PDNR-F](Singleton Sequence)

FPTEVCPM050_D09_PDNR-F 1062  bases 
GAATCCAGAAGAGGCTGAGGAAGATGGCGCAAATGTTGATTTAGACTCCCAAAGAAAGGGGAAATGTGTTGTTTTGAAAACATCTACTCGTCAAACTATCTTTCTTCCAGTTGTTGGCCTGGTAGATCCTGATAAGCTGAAACCAGGTGATCTTGTTGGCGTTAACAAAGACAGCTACCTGATATTGGATACTCTTCCATCTGAGTATGACTCACGAGTAAAAGCAATGGAGGTCGATGAAAAACCAACTGAAGATTATAGTGACATTGGAGGGCTTGAGAAGCAGATTCAAGAACTTGTTGAAGCCATAGTGTTGCCGATGACACACAAGGATAGGTTTGAGAAGTTAGGCATTCGACCACCTAAAGGAGTTCTATTATATGGACCACCTGGCACTGGAAAAACATTGATGGCTCGTGCTTGTGCTGCACAAACAAATGCAACTTTTCTGAAGCTGGCAGGCCCACAGCTTGTTCAGATGTTCATTGGTGATGGTGCGAAACTTGTACGTGATGCTTTTCAGCTTGCAAAAGAAAAATCTCCTTGTATCATTTTCATAGATGAAATTGATGCAATAGGAACCAAACGTTTTGATAGTGAAGTAAGTGGTGATAGAGAGGTTCAACGAACAATGTTGGAACTACTTAATCAGCTTGATGGGTTTAGTAACGATGATCGGATAAAGGTCATAGCAGCAACTAACCGTGCTGATATTCTTGACCCTGCTTTGGTGCGATCTGGCCGTCTGGATCGCAAAATTGAGTTTCCCCATCCCTCCGAGGAAGCAAGAGCTAGAATTTTACAGATCCACTCGAGGAAAATGAATGTGCATCCTGATGTCAACTTTGAAGAGCTTGCTCGATCTACAGATGATTTCAATGGCGCTCAGCTAAAGGCAGTTTGTGTGGAGGCTGGCATGCTTGCTCTCCGTAGAGATGCGACTGAGTGGTCCATGAAGATTTCAATGAGGCATATTCAGTGCAAGCCAGAGAAGCCAGCTGAACTACTATGCTGAAGTAGACTCAATGTTTTATTATTCCACTTTCGTAAGCTCTTTGGTCC

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002512434.1	26S protease regulatory subunit 6a, putative	Ricinus communis	429	608 bits (1568)	e-172	308/317 (97%)	316/317 (99%), Gaps = 1/317 (0%)	+2

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[16 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	03050	Proteasome	[PATH:ath03050]	FPTEVCPM050_D09_PDNR-F	AT3G05530	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G05530	AT3G05530	"proteasome regulatory particle, base subcomplex"	GO:0008540	other intracellular components
AT3G05530	AT3G05530	cytoplasm	GO:0005737	other cytoplasmic components
AT3G05530	AT3G05530	nucleus	GO:0005634	nucleus
AT3G05530	AT3G05530	nucleus	GO:0005634	nucleus
AT3G05530	AT3G05530	ATPase activity	GO:0016887	hydrolase activity
AT3G05530	AT3G05530	ATPase activity	GO:0016887	hydrolase activity
AT3G05530	AT3G05530	calmodulin binding	GO:0005516	protein binding
AT3G05530	AT3G05530	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT3G05530	AT3G05530	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT3G05530	AT3G05530	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT3G05530	AT3G05530	embryo sac development	GO:0009553	developmental processes
AT3G05530	AT3G05530	pollen development	GO:0009555	developmental processes
AT3G05530	AT3G05530	proteasome complex	GO:0000502	other intracellular components
AT3G05530	AT3G05530	proteasomal protein catabolic process	GO:0010498	protein metabolism
AT3G05530	AT3G05530	proteasomal protein catabolic process	GO:0010498	other cellular processes
AT3G05530	AT3G05530	proteasomal protein catabolic process	GO:0010498	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
FPTEVCPM050_D09_PDNR-F[interact with..]	FPTEVCPM063_B02_PDNR-F FPTEVCPM077_D01_PDNR-F FPTEVCPM066_D02_PDNR-F Contig0300 FPTEVCPM073_G06_PDNR-F FPTEVCPM065_E09_PDNR-F FPTEVCPM050_D09_PDNR-F Contig0932

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FPTEVCPM063_B02_PDNR-F	929	gb	ABI31652.1	26S proteasome regulatory particle non-ATPase subunit 12	Camellia sinensis	267	390 bits (1002)	e-106	194/256 (75%)	218/256 (85%), Gaps = 1/256 (0%)	+2
FPTEVCPM077_D01_PDNR-F	1152	gb	ABI31652.1	26S proteasome regulatory particle non-ATPase subunit 12	Camellia sinensis	267	309 bits (792)	3e-82	163/267 (61%)	192/267 (71%), Gaps = 3/267 (1%)	+3
FPTEVCPM066_D02_PDNR-F	960	ref	XP_002278126.1	PREDICTED: hypothetical protein	Vitis vinifera	235	411 bits (1056)	e-113	209/223 (93%)	217/223 (97%)	+3
Contig0300	1033	ref	NP_001061436.1	Os08g0277900	Oryza sativa (japonica cultivar-group)	232	311 bits (797)	7e-83	159/211 (75%)	188/211 (89%), Gaps = 1/211 (0%)	+1
FPTEVCPM073_G06_PDNR-F	1147	emb	CBI37752.1	unnamed protein product	Vitis vinifera	291	236 bits (602)	4e-60	134/266 (50%)	155/266 (58%), Gaps = 6/266 (2%)	+1
FPTEVCPM065_E09_PDNR-F	1085	ref	XP_002277029.1	PREDICTED: similar to AtRPN1a/RPN1A (26S proteasome regulatory subunit S2 1A); binding	Vitis vinifera	890	402 bits (1032)	e-128	203/290 (70%)	232/290 (80%)	+1
FPTEVCPM050_D09_PDNR-F	1062	ref	XP_002512434.1	26S protease regulatory subunit 6a, putative	Ricinus communis	429	608 bits (1568)	e-172	308/317 (97%)	316/317 (99%), Gaps = 1/317 (0%)	+2
Contig0932	1266	ref	XP_002523664.1	26S protease regulatory subunit 6b, putative	Ricinus communis	415	605 bits (1559)	e-171	318/355 (89%)	330/355 (92%), Gaps = 4/355 (1%)	+1