Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	Contig0932	1266

Contig Map:

(ProjectName=FPTEVCPM SequenceName=Contig0932):
FPTEVCPM021_A03_pDNR-F:
FPTEVCPM017_C12_pDNR-F:
FPTEVCPM085_H08_PDNR-F:

Sequences View:[Contig0932](Contig Seguence)

1266 bases 
GGTCTCTCTCTCTCAGAACCCTTAACAGAGGACCGCAAAGCGCCCTTTCCAAAACGTCCTCTCATGGCTTCTGCGCCGATGGTCCTCGACCCAAAACCACCTCCGACGCCGACAGATCTTCCACCAGCGAGCTTCTCTGCTGTACGGACGGACGCCGTCATCTCCGGAGACGAGGAGGAGGATCTATATGGCCGCCTGAAGTCTCTCCAGCGACAGCTCGAGTTCATCAACATTCAGGAAGAGTACGTTAAGGATGAGCATAAGAACCTTAAGCGTGAGCTCCTTCGCGCCCAGGAGGAGGTCAAGCGGATCCAGTCGGTTCCACTCGTCATCGGCCAATTCATGGAGATGGTCGATCAGAATAATGGCATAGTCGGTTCTACCACTGGATCGAACTACTATGTTCGGATTCTTAGCACTATCAACCGTGAGCTACTTAAGCCATCCGCGTCCGTCGCTCTTCACCGACATTCTAATGCCCTCGTCGATGTGCTGCCGCCTGAGGCCGATTCGAGTATTTCCCTCCTCAGCCAGTCGGAGAAACCTGATGTTACCTACAACGATATTGGTGGTTGTGATATTCAGAAACAGGAAATCCGTGAAGCAGTTGAGTTACCCCTTACACATCACGAATTGTACAAGCAAATAGGTATTGACCCACCTAGAGGTGTTCTTCTTTATGGACCTCCTGGTACTGGGAAGACCATGCTTGCTAAAGCTGTGGCTAATCATACGACTGCTGCTTTTATTAGAGTTGTTGGTTCAGAATTTGTTCAGAAGTACTTGGGCGAGGGACCGAGGATGGTTCGGGATGTATTCCGTCTTGCTAAAGAAAATGCCCCTGCGATTATCTTTATAGATGAGGTGGATGCCATTGCTACTGCACGTTTTGACGCACAAACTGGAGCTGATAGGGAAGTTCAGCGTATTCTTATGGAACTCTTGAATCAGATGGATGGATTCGACCAAACTGTTAATGTTAAAGTCATAATGGCAACCAATCGTGCTGACACTTTGGATCCTGCCCTTATACGTCCTGGTAGGCTTGATCGTAAAATTGAGTTCCCCTTACCGGATAGACGACAGAAAAGGCTTGTTTTTTCAGGTCTGCACCTGCTAAAATGAATCTTAGTGATGAGGTGATTTGGGAGGACTATGTTTTCTAGACTTGATAAGATTAGTGCAGCTGAGATCGCAGCATTTGTCAGGAAGCCGGTATGCTGCCGTCGCAGAACCGTTACGTTATCCTTCCCAAAGACTTCAGAA

Sequences View:[Contig0932](Singleton Sequence)

Contig0932 1266  bases 
GGTCTCTCTCTCTCAGAACCCTTAACAGAGGACCGCAAAGCGCCCTTTCCAAAACGTCCTCTCATGGCTTCTGCGCCGATGGTCCTCGACCCAAAACCACCTCCGACGCCGACAGATCTTCCACCAGCGAGCTTCTCTGCTGTACGGACGGACGCCGTCATCTCCGGAGACGAGGAGGAGGATCTATATGGCCGCCTGAAGTCTCTCCAGCGACAGCTCGAGTTCATCAACATTCAGGAAGAGTACGTTAAGGATGAGCATAAGAACCTTAAGCGTGAGCTCCTTCGCGCCCAGGAGGAGGTCAAGCGGATCCAGTCGGTTCCACTCGTCATCGGCCAATTCATGGAGATGGTCGATCAGAATAATGGCATAGTCGGTTCTACCACTGGATCGAACTACTATGTTCGGATTCTTAGCACTATCAACCGTGAGCTACTTAAGCCATCCGCGTCCGTCGCTCTTCACCGACATTCTAATGCCCTCGTCGATGTGCTGCCGCCTGAGGCCGATTCGAGTATTTCCCTCCTCAGCCAGTCGGAGAAACCTGATGTTACCTACAACGATATTGGTGGTTGTGATATTCAGAAACAGGAAATCCGTGAAGCAGTTGAGTTACCCCTTACACATCACGAATTGTACAAGCAAATAGGTATTGACCCACCTAGAGGTGTTCTTCTTTATGGACCTCCTGGTACTGGGAAGACCATGCTTGCTAAAGCTGTGGCTAATCATACGACTGCTGCTTTTATTAGAGTTGTTGGTTCAGAATTTGTTCAGAAGTACTTGGGCGAGGGACCGAGGATGGTTCGGGATGTATTCCGTCTTGCTAAAGAAAATGCCCCTGCGATTATCTTTATAGATGAGGTGGATGCCATTGCTACTGCACGTTTTGACGCACAAACTGGAGCTGATAGGGAAGTTCAGCGTATTCTTATGGAACTCTTGAATCAGATGGATGGATTCGACCAAACTGTTAATGTTAAAGTCATAATGGCAACCAATCGTGCTGACACTTTGGATCCTGCCCTTATACGTCCTGGTAGGCTTGATCGTAAAATTGAGTTCCCCTTACCGGATAGACGACAGAAAAGGCTTGTTTTTTCAGGTCTGCACCTGCTAAAATGAATCTTAGTGATGAGGTGATTTGGGAGGACTATGTTTTCTAGACTTGATAAGATTAGTGCAGCTGAGATCGCAGCATTTGTCAGGAAGCCGGTATGCTGCCGTCGCAGAACCGTTACGTTATCCTTCCCAAAGACTTCAGAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002523664.1	26S protease regulatory subunit 6b, putative	Ricinus communis	415	605 bits (1559)	e-171	318/355 (89%)	330/355 (92%), Gaps = 4/355 (1%)	+1

KEGG Pathway	GO
Contig0932[1 Pathway]	Contig0932[10 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	03050	Proteasome	[PATH:ath03050]	Contig0932	AT5G58290	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G58290	AT5G58290	cell wall	GO:0005618	cell wall
AT5G58290	AT5G58290	membrane	GO:0016020	other membranes
AT5G58290	AT5G58290	"proteasome regulatory particle, base subcomplex"	GO:0008540	other intracellular components
AT5G58290	AT5G58290	nucleus	GO:0005634	nucleus
AT5G58290	AT5G58290	ATPase activity	GO:0016887	hydrolase activity
AT5G58290	AT5G58290	ATPase activity	GO:0016887	hydrolase activity
AT5G58290	AT5G58290	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT5G58290	AT5G58290	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT5G58290	AT5G58290	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT5G58290	AT5G58290	proteasome complex	GO:0000502	other intracellular components

Gene Network Informations
Gene Network	Interact with..
Contig0932[interact with..]	FPTEVCPM063_B02_PDNR-F FPTEVCPM077_D01_PDNR-F FPTEVCPM038_C03_PDNR-F FPTEVCPM073_G06_PDNR-F FPTEVCPM065_E09_PDNR-F FPTEVCPM067_C11_PDNR-F FPTEVCPM080_E04_PDNR-F Contig1245 Contig1470 FPTEVCPM039_E11_PDNR-F Contig0932

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FPTEVCPM063_B02_PDNR-F	929	gb	ABI31652.1	26S proteasome regulatory particle non-ATPase subunit 12	Camellia sinensis	267	390 bits (1002)	e-106	194/256 (75%)	218/256 (85%), Gaps = 1/256 (0%)	+2
FPTEVCPM077_D01_PDNR-F	1152	gb	ABI31652.1	26S proteasome regulatory particle non-ATPase subunit 12	Camellia sinensis	267	309 bits (792)	3e-82	163/267 (61%)	192/267 (71%), Gaps = 3/267 (1%)	+3
FPTEVCPM038_C03_PDNR-F	1050	gb	ACG35868.1	replication factor C subunit 3	Zea mays	362	509 bits (1312)	e-142	259/321 (80%)	285/321 (88%), Gaps = 4/321 (1%)	+1
FPTEVCPM073_G06_PDNR-F	1147	emb	CBI37752.1	unnamed protein product	Vitis vinifera	291	236 bits (602)	4e-60	134/266 (50%)	155/266 (58%), Gaps = 6/266 (2%)	+1
FPTEVCPM065_E09_PDNR-F	1085	ref	XP_002277029.1	PREDICTED: similar to AtRPN1a/RPN1A (26S proteasome regulatory subunit S2 1A); binding	Vitis vinifera	890	402 bits (1032)	e-128	203/290 (70%)	232/290 (80%)	+1
FPTEVCPM067_C11_PDNR-F	883	gb	ABB53473.1	GDP-mannose pyrophosphorylase	Malpighia glabra	361	394 bits (1011)	e-108	194/217 (89%)	204/217 (94%)	+2
FPTEVCPM080_E04_PDNR-F	1184	emb	CAB79775.1	GDP-mannose pyrophosphorylase like protein	Arabidopsis thaliana	351	313 bits (802)	e-106	162/201 (80%)	179/201 (89%), Gaps = 1/201 (0%)	+2
Contig1245	1280	emb	CAA72741.1	RAD23, isoform I	Daucus carota	382	259 bits (661)	6e-67	154/317 (48%)	187/317 (58%), Gaps = 4/317 (1%)	-2
Contig1470	1118	ref	XP_002510414.1	proteasome subunit alpha type, putative	Ricinus communis	283	406 bits (1044)	e-111	197/227 (86%)	213/227 (93%)	+3
FPTEVCPM039_E11_PDNR-F	1047	ref	XP_002304360.1	predicted protein	Populus trichocarpa	386	484 bits (1245)	e-135	246/345 (71%)	283/345 (82%)	+2
Contig0932	1266	ref	XP_002523664.1	26S protease regulatory subunit 6b, putative	Ricinus communis	415	605 bits (1559)	e-171	318/355 (89%)	330/355 (92%), Gaps = 4/355 (1%)	+1