Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	Contig1177	1261

Contig Map:

(ProjectName=FPTEVCPM SequenceName=Contig1177):
FPTEVCPM071_H04_PDNR-F:
FPTEVCPM069_E07_PDNR-F:

Sequences View:[Contig1177](Contig Seguence)

1261 bases 
GTTGGATCCGGAGGCCTATTTCCTATTGGAAAAGATTCCAAAGAAGAGGTTCAGCTTTTCCTGGGCAATGCAGGAACTGCAATGCGCCCTTTGACAGCAGCTGTAACAGCAGCTGGAGGAAATGCAAGCTATGTGTTAGATGGTGTTCCACGAATGAGGGAGAGACCTATAGGGGATTTGGTTGATGGGTTGAAGCAACTGGGCGCAGATGTTGATTGTTTCTTGGGCACCAAGTGCCCGCCGGTTCGTGTTAATGCTGGGGGAGGCCTTCCAGGGGGCAAGGTTAAGCTGTCTGGATCTATTAGCAGCCAATATTTAACAGCATTGCTCATGGCATCTCCCCTTGCCATTGGAGAGGTGGAAATTGAGATTATTGATAAGCTAATCTCCATCCCATATGTTGAAATGACTCTGAAATTGATGGAGCGCTTTGGCGTCACCGTAGAGCATTCTAGTTCCTGGGATAGATTCTTCATCAAAGGTGGTCAGACATACAGATCGCCTGGAAATGCTTTTGTTGAGGGGGATGCATCGAGTGCTAGTTATTTCTTGGCCGGTGCAGCAGTCACAGGTGGAACTGTGACTGTGGAAGGCTGTGGCACAAGCAGCTTGCAGGGCGATGTTAAGTTTGCTGAGGTGCTTGAGAAAATGGGGGCGAAGGTTTCTTGGACCGAAAATAGTGTCACTGTTACCGGTCCTCCTAGAGATCCTTTCAAAAGGAGAAACTTGCGAGCCGTTGATGTGAACATGAACAAAATGCCTGATGTTGCCATGACCCTGGCTGTGGTAGCTCTGTTTGCTGATGGCCCAACGGCCATAAGGGATGTTGCGTCCTGGAGAGTGAAGGAAACTGAAAGGATGATAGCCATTTGCACAGAGCTGAGAAAGCTGGGAGCTACAGTAGAGGAAGGTCCAGACTACTGCATCATCTCTCCGCCCGAGAAATTGAATGTGGCTGCCATTGACACGTATGATGATCACAGGATGGCCATGGCTTTCTCCATTGCTGCCTGCACTGATGTTCCTGTGACCATCAGGATCCAGGCTGCACTCGAAAGACCTTCCCAGATTATTTTGATGTTTGAGAGGTTTACGAGATTATCACAGGATAACATTGTGGATAGTGTTGCTGTCTAAGGAAAATAAGCGTGTAAGTCATGTAGAAATCCAGATTCCAGATGTCTTTCTGTAAGAGCGATCTTTAATTTATTTTATAACATTTTTATTTAATTTTGGTGGGAGTCCCTGCGCATTGCAATGG

Sequences View:[Contig1177](Singleton Sequence)

Contig1177 1261  bases 
GTTGGATCCGGAGGCCTATTTCCTATTGGAAAAGATTCCAAAGAAGAGGTTCAGCTTTTCCTGGGCAATGCAGGAACTGCAATGCGCCCTTTGACAGCAGCTGTAACAGCAGCTGGAGGAAATGCAAGCTATGTGTTAGATGGTGTTCCACGAATGAGGGAGAGACCTATAGGGGATTTGGTTGATGGGTTGAAGCAACTGGGCGCAGATGTTGATTGTTTCTTGGGCACCAAGTGCCCGCCGGTTCGTGTTAATGCTGGGGGAGGCCTTCCAGGGGGCAAGGTTAAGCTGTCTGGATCTATTAGCAGCCAATATTTAACAGCATTGCTCATGGCATCTCCCCTTGCCATTGGAGAGGTGGAAATTGAGATTATTGATAAGCTAATCTCCATCCCATATGTTGAAATGACTCTGAAATTGATGGAGCGCTTTGGCGTCACCGTAGAGCATTCTAGTTCCTGGGATAGATTCTTCATCAAAGGTGGTCAGACATACAGATCGCCTGGAAATGCTTTTGTTGAGGGGGATGCATCGAGTGCTAGTTATTTCTTGGCCGGTGCAGCAGTCACAGGTGGAACTGTGACTGTGGAAGGCTGTGGCACAAGCAGCTTGCAGGGCGATGTTAAGTTTGCTGAGGTGCTTGAGAAAATGGGGGCGAAGGTTTCTTGGACCGAAAATAGTGTCACTGTTACCGGTCCTCCTAGAGATCCTTTCAAAAGGAGAAACTTGCGAGCCGTTGATGTGAACATGAACAAAATGCCTGATGTTGCCATGACCCTGGCTGTGGTAGCTCTGTTTGCTGATGGCCCAACGGCCATAAGGGATGTTGCGTCCTGGAGAGTGAAGGAAACTGAAAGGATGATAGCCATTTGCACAGAGCTGAGAAAGCTGGGAGCTACAGTAGAGGAAGGTCCAGACTACTGCATCATCTCTCCGCCCGAGAAATTGAATGTGGCTGCCATTGACACGTATGATGATCACAGGATGGCCATGGCTTTCTCCATTGCTGCCTGCACTGATGTTCCTGTGACCATCAGGATCCAGGCTGCACTCGAAAGACCTTCCCAGATTATTTTGATGTTTGAGAGGTTTACGAGATTATCACAGGATAACATTGTGGATAGTGTTGCTGTCTAAGGAAAATAAGCGTGTAAGTCATGTAGAAATCCAGATTCCAGATGTCTTTCTGTAAGAGCGATCTTTAATTTATTTTATAACATTTTTATTTAATTTTGGTGGGAGTCCCTGCGCATTGCAATGG

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ABE77393.4	EPSP synthase	Allium macrostemon	522	598 bits (1542)	e-174	297/346 (85%)	320/346 (92%)	+1

KEGG Pathway	GO
Contig1177[1 Pathway]	Contig1177[27 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Amino Acid Metabolism	00400	Phenylalanine, tyrosine and tryptophan biosynthesis	[PATH:ath00400]	Contig1177	AT2G45300	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT2G45300	AT2G45300	chloroplast	GO:0009507	chloroplast
AT2G45300	AT2G45300	chloroplast	GO:0009507	chloroplast
AT2G45300	AT2G45300	3-phosphoshikimate 1-carboxyvinyltransferase activity	GO:0003866	transferase activity
AT2G45300	AT2G45300	aromatic amino acid family biosynthetic process	GO:0009073	other cellular processes
AT2G45300	AT2G45300	aromatic amino acid family biosynthetic process	GO:0009073	other metabolic processes
AT2G45300	AT2G45300	chorismate biosynthetic process	GO:0009423	other cellular processes
AT2G45300	AT2G45300	chorismate biosynthetic process	GO:0009423	other metabolic processes
AT2G45300	AT2G45300	glyphosate metabolic process	GO:0018920	other cellular processes
AT2G45300	AT2G45300	glyphosate metabolic process	GO:0018920	other metabolic processes
AT2G45300	AT2G45300	chloroplast	GO:0009507	chloroplast
AT2G45300	AT2G45300	chloroplast	GO:0009507	chloroplast
AT2G45300	AT2G45300	3-phosphoshikimate 1-carboxyvinyltransferase activity	GO:0003866	transferase activity
AT2G45300	AT2G45300	aromatic amino acid family biosynthetic process	GO:0009073	other cellular processes
AT2G45300	AT2G45300	aromatic amino acid family biosynthetic process	GO:0009073	other metabolic processes
AT2G45300	AT2G45300	chorismate biosynthetic process	GO:0009423	other cellular processes
AT2G45300	AT2G45300	chorismate biosynthetic process	GO:0009423	other metabolic processes
AT2G45300	AT2G45300	glyphosate metabolic process	GO:0018920	other cellular processes
AT2G45300	AT2G45300	glyphosate metabolic process	GO:0018920	other metabolic processes
AT2G45300	AT2G45300	chloroplast	GO:0009507	chloroplast
AT2G45300	AT2G45300	chloroplast	GO:0009507	chloroplast
AT2G45300	AT2G45300	3-phosphoshikimate 1-carboxyvinyltransferase activity	GO:0003866	transferase activity
AT2G45300	AT2G45300	aromatic amino acid family biosynthetic process	GO:0009073	other cellular processes
AT2G45300	AT2G45300	aromatic amino acid family biosynthetic process	GO:0009073	other metabolic processes
AT2G45300	AT2G45300	chorismate biosynthetic process	GO:0009423	other cellular processes
AT2G45300	AT2G45300	chorismate biosynthetic process	GO:0009423	other metabolic processes
AT2G45300	AT2G45300	glyphosate metabolic process	GO:0018920	other cellular processes
AT2G45300	AT2G45300	glyphosate metabolic process	GO:0018920	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
Contig1177[interact with..]	FPTEVCPM032_A12_PDNR-F Contig0793 FPTEVCPM065_G10_PDNR-F FPTEVCPM067_C11_PDNR-F FPTEVCPM080_E04_PDNR-F Contig1177

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FPTEVCPM032_A12_PDNR-F	1042	sp	O64982.1	PRS7_PRUPE RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S proteasome subunit 7; AltName: Full=26S proteasome		425	507 bits (1305)	e-144	249/265 (93%)	257/265 (96%)	+3
Contig0793	1134	emb	CAA56354.1	NADP dependent malic enzyme	Phaseolus vulgaris	589	573 bits (1477)	e-161	291/370 (78%)	316/370 (85%)	+2
FPTEVCPM065_G10_PDNR-F	977	ref	NP_850025.1	PFK5 (PHOSPHOFRUCTOKINASE 5); 6-phosphofructokinase	Arabidopsis thaliana	537	340 bits (871)	2e-91	156/197 (79%)	179/197 (90%)	+1
FPTEVCPM067_C11_PDNR-F	883	gb	ABB53473.1	GDP-mannose pyrophosphorylase	Malpighia glabra	361	394 bits (1011)	e-108	194/217 (89%)	204/217 (94%)	+2
FPTEVCPM080_E04_PDNR-F	1184	emb	CAB79775.1	GDP-mannose pyrophosphorylase like protein	Arabidopsis thaliana	351	313 bits (802)	e-106	162/201 (80%)	179/201 (89%), Gaps = 1/201 (0%)	+2
Contig1177	1261	gb	ABE77393.4	EPSP synthase	Allium macrostemon	522	598 bits (1542)	e-174	297/346 (85%)	320/346 (92%)	+1