Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	FPTEVCPM033_D11_PDNR-F	1027

Contig Map:

(ProjectName=FPTEVCPM
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FPTEVCPM033_D11_PDNR-F](Singleton Sequence)

FPTEVCPM033_D11_PDNR-F 1027  bases 
GGATCGATGGCTTCTTTCTAGGGCTGCCTCCCTCTCGGAGTATAGGCCCGTGAAGAAGACGAAGAAGAGCACCGAGAGCATCAACAATAGGCTAGCCCTTGTTATGGAGAGTGGAAAGTAGAATCTCGGATACAAGACCGTTCTTAGGTCCCTAAGAAGCTCCAAAGATAATGTGGACTTGGGAACTGCTTGATACTTCGGACTTTGTTGTCTTGGCATCGTTGATCCAGGCGATTCTGACATCATCAAGTCCATCCCTGGCGGTCAGTAGGGTTGTAAACGAGGCGAGCTTGAGTGAGCTGAGCCTCGGCTCATGTTTGGCTCATTTCAATTTGGCTTGTGTTCGAAATGGCTTGTGAACAATGTGTTCGTGTTCGGCTCGAATAACATATTCCTGTTCGTGTTTGGCATGAATAACATATTCTTGTTCGTGTTCGGCTCGAAATAGGCTTGGTAGAATATAAAATTCCATAGAATCGCACCAATAATTCCGTGTACGGCGGAATAACACCGATAACACCCGAGTAACACTCGCAATAACACCTGATTAACACTCCAAATAGCGCGGGCCGTTATTCCGTGGTGTTATTGGTGTTATTCCGCAGTGGATAACACTAGCGAACAACAGAATAATATCGGGGTTGTTACTCATTGTTATTTCGCGGTGTTATTGGTGCTATCAGTGTCATTCTGCTGTGTAACACTGCGGAATAACACTAATAGTACCACTGACGGAGGAATAACACTGATTACACAGCGGGTGTCCGCAGTGTTATTGGTGCTATCAGTGTTATTCCGCGGTATTACACTGTGGAATAACACCCATAATTCTGCGGAATATTGAGTATATTTATATTTTAATTAATTAATTAATTAATTTATTTATTTTCAAGCCAATTCGAGGTGAACACGACCGAACAAAATTTATTCGTATTCGGCTCGTTCGAGCCGAACACGAGCTGTTTGCGGACACGAGCCGTTTTGACATCCCTAGCTGTCAGTGATTTTATGAATTATGGCTTTGGTC

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ACF06475.1	ribosomal protein L30	Elaeis guineensis	112	97.1 bits (240)	3e-18	60/110 (54%)	65/110 (59%), Gaps = 36/110 (32%)	+2

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[8 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Translation	03010	Ribosome	[PATH:ath03010]	FPTEVCPM033_D11_PDNR-F	AT1G36240	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G36240	AT1G36240	structural constituent of ribosome	GO:0003735	structural molecule activity
AT1G36240	AT1G36240	translation	GO:0006412	protein metabolism
AT1G36240	AT1G36240	translation	GO:0006412	other cellular processes
AT1G36240	AT1G36240	translation	GO:0006412	other metabolic processes
AT1G36240	AT1G36240	cytosolic large ribosomal subunit	GO:0022625	cytosol
AT1G36240	AT1G36240	cytosolic large ribosomal subunit	GO:0022625	ribosome
AT1G36240	AT1G36240	cytosolic large ribosomal subunit	GO:0022625	other cytoplasmic components
AT1G36240	AT1G36240	cytosolic large ribosomal subunit	GO:0022625	other intracellular components

Gene Network Informations
Gene Network	Interact with..
FPTEVCPM033_D11_PDNR-F[interact with..]	FPTEVCPM045_F12_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FPTEVCPM045_F12_PDNR-F	459	ref	XP_002517499.1	60S ribosomal protein L30, putative	Ricinus communis	112	155 bits (391)	2e-36	70/77 (90%)	76/77 (98%)	+2