Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	EICPS025_B07_pDNR-F	879

Contig Map:

(ProjectName=FEICP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[EICPS025_B07_pDNR-F](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ACF06509.1	RNA polymerase II 15.9 kDa subunit	Elaeis guineensis	138	217 bits (552)	1e-54	109/121 (90%)	116/121 (95%)	+3

KEGG Pathway	GO
NoContigFind[3 Pathway]	NoContigFind[32 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Transcription	03020	RNA polymerase	[PATH:ath03020]	EICPS025_B07_pDNR-F	AT5G09920	FEICP
Metabolism	Nucleotide Metabolism	00230	Purine metabolism	[PATH:ath00230]	EICPS025_B07_pDNR-F	AT5G09920	FEICP
Metabolism	Nucleotide Metabolism	00240	Pyrimidine metabolism	[PATH:ath00240]	EICPS025_B07_pDNR-F	AT5G09920	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G09920	AT5G09920	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	transcription
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	other cellular processes
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	other metabolic processes
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G09920	AT5G09920	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	transcription
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	other cellular processes
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	other metabolic processes
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G09920	AT5G09920	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	transcription
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	other cellular processes
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	other metabolic processes
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	nucleus
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G09920	AT5G09920	"DNA-directed RNA polymerase II, core complex"	GO:0005665	other intracellular components
AT5G09920	AT5G09920	DNA-directed RNA polymerase activity	GO:0003899	transferase activity
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	transcription
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	other cellular processes
AT5G09920	AT5G09920	transcription from RNA polymerase II promoter	GO:0006366	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
EICPS025_B07_pDNR-F[interact with..]	Contig2405 EICPM056-H01_pDNR-R EICPS054_B10_pDNR-F EICPM004-A9_pDNR-R EICPS-D4_pDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig2405	1041	ref	XP_002441353.1	hypothetical protein SORBIDRAFT_09g025080	Sorghum bicolor	267	396 bits (1018)	e-108	197/265 (74%)	221/265 (83%), Gaps = 7/265 (2%)	+3
EICPM056-H01_pDNR-R	1030	ref	XP_002441353.1	hypothetical protein SORBIDRAFT_09g025080	Sorghum bicolor	267	256 bits (654)	3e-66	129/180 (71%)	147/180 (81%), Gaps = 3/180 (1%)	+2
EICPS054_B10_pDNR-F	901	ref	NP_001044390.1	Os01g0772200	Oryza sativa (japonica cultivar-group)	117	72.8 bits (177)	5e-11	32/35 (91%)	33/35 (94%)	+1
EICPM004-A9_pDNR-R	997	ref	XP_002518700.1	DNA-directed RNA polymerase II subunit, putative	Ricinus communis	318	225 bits (573)	5e-59	119/172 (69%)	135/172 (78%)	+1
EICPS-D4_pDNR-F	936	sp	Q42877.1	RPB2_SOLLC RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA polymerase II subunit B2; Short=RNA polymerase II subunit		1191	414 bits (1063)	e-114	198/208 (95%)	205/208 (98%)	+3