Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	Contig3693	1035

Contig Map:

(ProjectName=FEICP SequenceName=Contig3693):
EICPM049-H04_pDNR-R:
EICPM049_H04_pDNR-F:

Sequences View:[Contig3693](Contig Seguence)

1035 bases 
GGAAACGGGTGCTAAAAAGCTGAGGCTAAAACATGGCGGCCACTGCTCCGATCGCCGGCGCCTGCTGCACCTCATCGCCTTCCCCAACCCAAATGCGCAGACTTTCTCGCCAAACTTTACTCCCCCTCTCCTCCTCTTTCACCAAAAGCCTGCACTTCAATTCCTCCTCCTCCCCCAACTCCTTCCACTCCCTCACCCGCAGAACTCGCGCCGGATCAGCCGTTGCTCCGACGATGAGCATGGAGGCGGGCATAGGTGTCATGGGAACGAAGTTGGGAATGATGTCCTACTTCGAGCCGGAGGGCACCGTTGTCCCCGTAACCGTTGTCGGATTCCGTGAGGGCAACATCGTCACCCAGATCAAGACCACCGCCACCGAAGGATACGACGCCGTTCAGGTGGGATACCGCCGCGTTCGCGACCGGAAGCTCACCAGGCCGGAGCTCGGCCACCTCAGCAAGGCTGGCGCTATACCAATGCGCCATCTTCAGGAATTCCGGCTCACCTCCATCGAGGGTTTCGAACCAGGGCAGAGGCTCGTCATTGATGAGATATTCAAGGAGGGCGATCTCGTTGATGTCTCCGGGACGACCATTGGCAAGGGATTCCAAGGTGGCATCAAAAGACATAATTTTCGCCGTGGGCCAATGACTCATGGCTCTAAAAGCCATAGAGCACTGGGTTCCATCGGCGCCGGAACAACGCCTGGCCGAGTTTATAAAGGTAAAAAGATGCCCGGAAGGATGGGAGGAACTAAAAGAAAGATCCGAAAGCTGAAGATTGTCAAGATAGATAATGAATTGAGAGTTGTAATGATAAAAGGAGCCGTACCTGGAAAGCCTGGGAATCTTCTTCGCATTACACCTGCAAAGATTGTTGGAAAGAACATTCCTAAGAGTTAGGGTATATTTGTTCTCAATCAAAACGTACCTGTAACCTGTAACCTGTAACCTGTAACTGAGAACATTTTCTTTTCCAGATTCGAGAGCTTCCTTCTTTAGTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequences View:[Contig3693](Singleton Sequence)

Contig3693 1035  bases 
GGAAACGGGTGCTAAAAAGCTGAGGCTAAAACATGGCGGCCACTGCTCCGATCGCCGGCGCCTGCTGCACCTCATCGCCTTCCCCAACCCAAATGCGCAGACTTTCTCGCCAAACTTTACTCCCCCTCTCCTCCTCTTTCACCAAAAGCCTGCACTTCAATTCCTCCTCCTCCCCCAACTCCTTCCACTCCCTCACCCGCAGAACTCGCGCCGGATCAGCCGTTGCTCCGACGATGAGCATGGAGGCGGGCATAGGTGTCATGGGAACGAAGTTGGGAATGATGTCCTACTTCGAGCCGGAGGGCACCGTTGTCCCCGTAACCGTTGTCGGATTCCGTGAGGGCAACATCGTCACCCAGATCAAGACCACCGCCACCGAAGGATACGACGCCGTTCAGGTGGGATACCGCCGCGTTCGCGACCGGAAGCTCACCAGGCCGGAGCTCGGCCACCTCAGCAAGGCTGGCGCTATACCAATGCGCCATCTTCAGGAATTCCGGCTCACCTCCATCGAGGGTTTCGAACCAGGGCAGAGGCTCGTCATTGATGAGATATTCAAGGAGGGCGATCTCGTTGATGTCTCCGGGACGACCATTGGCAAGGGATTCCAAGGTGGCATCAAAAGACATAATTTTCGCCGTGGGCCAATGACTCATGGCTCTAAAAGCCATAGAGCACTGGGTTCCATCGGCGCCGGAACAACGCCTGGCCGAGTTTATAAAGGTAAAAAGATGCCCGGAAGGATGGGAGGAACTAAAAGAAAGATCCGAAAGCTGAAGATTGTCAAGATAGATAATGAATTGAGAGTTGTAATGATAAAAGGAGCCGTACCTGGAAAGCCTGGGAATCTTCTTCGCATTACACCTGCAAAGATTGTTGGAAAGAACATTCCTAAGAGTTAGGGTATATTTGTTCTCAATCAAAACGTACCTGTAACCTGTAACCTGTAACCTGTAACTGAGAACATTTTCTTTTCCAGATTCGAGAGCTTCCTTCTTTAGTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002523967.1	50S ribosomal protein L3, putative	Ricinus communis	285	353 bits (907)	1e-95	187/289 (64%)	210/289 (72%)	+3

KEGG Pathway	GO
Contig3693[1 Pathway]	Contig3693[20 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Translation	03010	Ribosome	[PATH:ath03010]	Contig3693	AT2G43030	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT2G43030	AT2G43030	chloroplast	GO:0009507	chloroplast
AT2G43030	AT2G43030	chloroplast	GO:0009507	chloroplast
AT2G43030	AT2G43030	chloroplast stroma	GO:0009570	plastid
AT2G43030	AT2G43030	chloroplast stroma	GO:0009570	plastid
AT2G43030	AT2G43030	chloroplast stroma	GO:0009570	chloroplast
AT2G43030	AT2G43030	chloroplast stroma	GO:0009570	chloroplast
AT2G43030	AT2G43030	chloroplast stroma	GO:0009570	other cytoplasmic components
AT2G43030	AT2G43030	chloroplast stroma	GO:0009570	other cytoplasmic components
AT2G43030	AT2G43030	chloroplast stroma	GO:0009570	other intracellular components
AT2G43030	AT2G43030	chloroplast stroma	GO:0009570	other intracellular components
AT2G43030	AT2G43030	membrane	GO:0016020	other membranes
AT2G43030	AT2G43030	structural constituent of ribosome	GO:0003735	structural molecule activity
AT2G43030	AT2G43030	translation	GO:0006412	protein metabolism
AT2G43030	AT2G43030	translation	GO:0006412	other cellular processes
AT2G43030	AT2G43030	translation	GO:0006412	other metabolic processes
AT2G43030	AT2G43030	ribosome	GO:0005840	ribosome
AT2G43030	AT2G43030	structural constituent of ribosome	GO:0003735	structural molecule activity
AT2G43030	AT2G43030	translation	GO:0006412	protein metabolism
AT2G43030	AT2G43030	translation	GO:0006412	other cellular processes
AT2G43030	AT2G43030	translation	GO:0006412	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
Contig3693[interact with..]	EICPM044_G08_pDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
EICPM044_G08_pDNR-F	922	ref	XP_002267500.1	PREDICTED: hypothetical protein	Vitis vinifera	336	335 bits (860)	3e-90	164/206 (79%)	180/206 (87%), Gaps = 13/206 (6%)	+2