Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FAECPM	FAECPM001_A03_pDNR-F	713

Contig Map:

(ProjectName=FAECPM
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FAECPM001_A03_pDNR-F](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
emb	CAO68524.1	unnamed protein product	Vitis vinifera	1126	161 bits (407)	6e-38	71/82 (86%)	78/82 (95%)	+3

KEGG Pathway	GO
NoContigFind[7 Pathway]	NoContigFind[120 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Replication and Repair	03410	Base excision repair	[PATH:ath03410]	FAECPM001_A03_pDNR-F	AT5G63960	FAECPM
Genetic Information Processing	Replication and Repair	03030	DNA replication	[PATH:ath03030]	FAECPM001_A03_pDNR-F	AT5G63960	FAECPM
Genetic Information Processing	Replication and Repair	03440	Homologous recombination	[PATH:ath03440]	FAECPM001_A03_pDNR-F	AT5G63960	FAECPM
Genetic Information Processing	Replication and Repair	03430	Mismatch repair	[PATH:ath03430]	FAECPM001_A03_pDNR-F	AT5G63960	FAECPM
Genetic Information Processing	Replication and Repair	03420	Nucleotide excision repair	[PATH:ath03420]	FAECPM001_A03_pDNR-F	AT5G63960	FAECPM
Metabolism	Nucleotide Metabolism	00230	Purine metabolism	[PATH:ath00230]	FAECPM001_A03_pDNR-F	AT5G63960	FAECPM
Metabolism	Nucleotide Metabolism	00240	Pyrimidine metabolism	[PATH:ath00240]	FAECPM001_A03_pDNR-F	AT5G63960	FAECPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G63960	AT5G63960	DNA binding	GO:0003677	DNA or RNA binding
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	nucleic acid binding	GO:0003676	nucleic acid binding
AT5G63960	AT5G63960	nucleotide binding	GO:0000166	nucleotide binding
AT5G63960	AT5G63960	DNA replication	GO:0006260	DNA or RNA metabolism
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other cellular processes
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other metabolic processes
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	DNA binding	GO:0003677	DNA or RNA binding
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	nucleic acid binding	GO:0003676	nucleic acid binding
AT5G63960	AT5G63960	nucleotide binding	GO:0000166	nucleotide binding
AT5G63960	AT5G63960	DNA replication	GO:0006260	DNA or RNA metabolism
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other cellular processes
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other metabolic processes
AT5G63960	AT5G63960	DNA binding	GO:0003677	DNA or RNA binding
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	nucleic acid binding	GO:0003676	nucleic acid binding
AT5G63960	AT5G63960	nucleotide binding	GO:0000166	nucleotide binding
AT5G63960	AT5G63960	DNA replication	GO:0006260	DNA or RNA metabolism
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other cellular processes
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other metabolic processes
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	DNA binding	GO:0003677	DNA or RNA binding
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	nucleic acid binding	GO:0003676	nucleic acid binding
AT5G63960	AT5G63960	nucleotide binding	GO:0000166	nucleotide binding
AT5G63960	AT5G63960	DNA replication	GO:0006260	DNA or RNA metabolism
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other cellular processes
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other metabolic processes
AT5G63960	AT5G63960	DNA binding	GO:0003677	DNA or RNA binding
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	nucleic acid binding	GO:0003676	nucleic acid binding
AT5G63960	AT5G63960	nucleotide binding	GO:0000166	nucleotide binding
AT5G63960	AT5G63960	DNA replication	GO:0006260	DNA or RNA metabolism
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other cellular processes
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other metabolic processes
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	DNA binding	GO:0003677	DNA or RNA binding
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	nucleic acid binding	GO:0003676	nucleic acid binding
AT5G63960	AT5G63960	nucleotide binding	GO:0000166	nucleotide binding
AT5G63960	AT5G63960	DNA replication	GO:0006260	DNA or RNA metabolism
AT5G63960	AT5G63960	DNA binding	GO:0003677	DNA or RNA binding
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	nucleic acid binding	GO:0003676	nucleic acid binding
AT5G63960	AT5G63960	nucleotide binding	GO:0000166	nucleotide binding
AT5G63960	AT5G63960	DNA replication	GO:0006260	DNA or RNA metabolism
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other cellular processes
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other metabolic processes
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	DNA binding	GO:0003677	DNA or RNA binding
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	nucleic acid binding	GO:0003676	nucleic acid binding
AT5G63960	AT5G63960	nucleotide binding	GO:0000166	nucleotide binding
AT5G63960	AT5G63960	DNA replication	GO:0006260	DNA or RNA metabolism
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other cellular processes
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other metabolic processes
AT5G63960	AT5G63960	DNA binding	GO:0003677	DNA or RNA binding
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	nucleic acid binding	GO:0003676	nucleic acid binding
AT5G63960	AT5G63960	nucleotide binding	GO:0000166	nucleotide binding
AT5G63960	AT5G63960	DNA replication	GO:0006260	DNA or RNA metabolism
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other cellular processes
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other metabolic processes
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	DNA binding	GO:0003677	DNA or RNA binding
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	nucleic acid binding	GO:0003676	nucleic acid binding
AT5G63960	AT5G63960	nucleotide binding	GO:0000166	nucleotide binding
AT5G63960	AT5G63960	DNA replication	GO:0006260	DNA or RNA metabolism
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other cellular processes
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other metabolic processes
AT5G63960	AT5G63960	DNA binding	GO:0003677	DNA or RNA binding
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	nucleic acid binding	GO:0003676	nucleic acid binding
AT5G63960	AT5G63960	nucleotide binding	GO:0000166	nucleotide binding
AT5G63960	AT5G63960	DNA replication	GO:0006260	DNA or RNA metabolism
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other cellular processes
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other metabolic processes
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	DNA binding	GO:0003677	DNA or RNA binding
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	nucleic acid binding	GO:0003676	nucleic acid binding
AT5G63960	AT5G63960	nucleotide binding	GO:0000166	nucleotide binding
AT5G63960	AT5G63960	DNA replication	GO:0006260	DNA or RNA metabolism
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other cellular processes
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other metabolic processes
AT5G63960	AT5G63960	DNA binding	GO:0003677	DNA or RNA binding
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	nucleic acid binding	GO:0003676	nucleic acid binding
AT5G63960	AT5G63960	nucleotide binding	GO:0000166	nucleotide binding
AT5G63960	AT5G63960	DNA replication	GO:0006260	DNA or RNA metabolism
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other cellular processes
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other metabolic processes
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	DNA binding	GO:0003677	DNA or RNA binding
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	nucleic acid binding	GO:0003676	nucleic acid binding
AT5G63960	AT5G63960	nucleotide binding	GO:0000166	nucleotide binding
AT5G63960	AT5G63960	DNA replication	GO:0006260	DNA or RNA metabolism
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other cellular processes
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other metabolic processes
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other cellular processes
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other metabolic processes
AT5G63960	AT5G63960	DNA binding	GO:0003677	DNA or RNA binding
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	nucleic acid binding	GO:0003676	nucleic acid binding
AT5G63960	AT5G63960	nucleotide binding	GO:0000166	nucleotide binding
AT5G63960	AT5G63960	DNA replication	GO:0006260	DNA or RNA metabolism
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other cellular processes
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other metabolic processes
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	DNA binding	GO:0003677	DNA or RNA binding
AT5G63960	AT5G63960	DNA-directed DNA polymerase activity	GO:0003887	transferase activity
AT5G63960	AT5G63960	nucleic acid binding	GO:0003676	nucleic acid binding
AT5G63960	AT5G63960	nucleotide binding	GO:0000166	nucleotide binding
AT5G63960	AT5G63960	DNA replication	GO:0006260	DNA or RNA metabolism
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other cellular processes
AT5G63960	AT5G63960	"nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"	GO:0006139	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
FAECPM001_A03_pDNR-F[interact with..]	FAECPM014_D02_PDNR-F Contig0376 FAECPM014_H09_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FAECPM014_D02_PDNR-F	1060	ref	XP_002324245.1	predicted protein	Populus trichocarpa	244	375 bits (962)	e-102	171/243 (70%)	207/243 (85%)	+1
Contig0376	1060	gb	ACF06468.1	40S ribosomal protein S5	Elaeis guineensis	195	358 bits (920)	4e-97	180/190 (94%)	188/190 (98%)	+1
FAECPM014_H09_PDNR-F	885	gb	ACG47588.1	60S ribosomal protein L7a	Zea mays	255	380 bits (977)	e-104	187/216 (86%)	194/216 (89%)	+2