Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FAECPM	Contig0376	1060

Contig Map:

(ProjectName=FAECPM SequenceName=Contig0376):
FAECPM007_D06_PDNRF:
FAECPM024_E08_PDNR-F:
FAECPM014_G05_PDNR-F:

Sequences View:[Contig0376](Contig Seguence)

1060 bases 
GACCGCCTAGGGTTTCTCTGGTGACGCAGCTGCGGCTCTCTCCTCCGCCAAGGGTTTCTCTAGTGCCACAACTGCGCCTCTCTCCTCCGCGAGCTTCGATTCGCATCCATGGCGGTTGCTGCTCCTACGGCCCCATTGCCGGCACCGTCCTCGGGGTTGGCTCCCCCTGCAGATGTTAAACTTTTTAATCGTTGGTCCTTTGAAGAAGTCGAGGTTTCTGACATGTCACTTGCTGACTATATTGCGGTAACTCCTTCGAAACATGCTACTTATCTTCCACACACTGCTGGACGGTATTCTGTGAAAAGGTTTAGGAAAGCACAATGTCCCATTGTTGAAAGGTTGACCAATTCATTGATGATGCATGGTCGTAACAATGGGAAGAAACTGAAGGCCGTTCGCATTGTTAAACATGCCATGGACATCATTCATCTCCTTACTGATACTAACCCAATTCAAATCATAGTTGATGCTGTCATCAACAGTGGACCAAGAGAGGATGCCACTAGAATTGGATCTGCTGGTGTTGTTAGGCGCCAGGCAGTTGATATTTCTCCTCTGAGACGGGTTAATCAAGCAATATATCTCCTCACAACAGGTGCTCGCGAGAGTGCTTTTCGGAACATTAAGACAATTGCTGAGTGTCTTGCTGATGAATTGATTAATGCGGCAAAGGGTTCTTCCAACAGTTATGCAATCAAGAAGAAAGACGAGATTGAACGTGTGGCGAAGGCAAACCGTTAGAAGGAAAATTTTCGAAAACAGAATTTCTGAAATGATTTCTAGCCTTTTTAAGGCGCGTTTAATATTGTTGTATCTTGTCTTAAGATTGTTATTGTGCTTTTAGTACTTGTTGAGTTGTGGATGTTTTGTTGTCTTATAAAATTTGGTGTTCGAATGTTTCTATTATACTTGCGGTTTCTTTATTTTCAGAGCACGGGAACTTCAAAAGTCAACTTTTATTTTTTCATAATGACCTTACAATTCATGTTTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequences View:[Contig0376](Singleton Sequence)

Contig0376 1060  bases 
GACCGCCTAGGGTTTCTCTGGTGACGCAGCTGCGGCTCTCTCCTCCGCCAAGGGTTTCTCTAGTGCCACAACTGCGCCTCTCTCCTCCGCGAGCTTCGATTCGCATCCATGGCGGTTGCTGCTCCTACGGCCCCATTGCCGGCACCGTCCTCGGGGTTGGCTCCCCCTGCAGATGTTAAACTTTTTAATCGTTGGTCCTTTGAAGAAGTCGAGGTTTCTGACATGTCACTTGCTGACTATATTGCGGTAACTCCTTCGAAACATGCTACTTATCTTCCACACACTGCTGGACGGTATTCTGTGAAAAGGTTTAGGAAAGCACAATGTCCCATTGTTGAAAGGTTGACCAATTCATTGATGATGCATGGTCGTAACAATGGGAAGAAACTGAAGGCCGTTCGCATTGTTAAACATGCCATGGACATCATTCATCTCCTTACTGATACTAACCCAATTCAAATCATAGTTGATGCTGTCATCAACAGTGGACCAAGAGAGGATGCCACTAGAATTGGATCTGCTGGTGTTGTTAGGCGCCAGGCAGTTGATATTTCTCCTCTGAGACGGGTTAATCAAGCAATATATCTCCTCACAACAGGTGCTCGCGAGAGTGCTTTTCGGAACATTAAGACAATTGCTGAGTGTCTTGCTGATGAATTGATTAATGCGGCAAAGGGTTCTTCCAACAGTTATGCAATCAAGAAGAAAGACGAGATTGAACGTGTGGCGAAGGCAAACCGTTAGAAGGAAAATTTTCGAAAACAGAATTTCTGAAATGATTTCTAGCCTTTTTAAGGCGCGTTTAATATTGTTGTATCTTGTCTTAAGATTGTTATTGTGCTTTTAGTACTTGTTGAGTTGTGGATGTTTTGTTGTCTTATAAAATTTGGTGTTCGAATGTTTCTATTATACTTGCGGTTTCTTTATTTTCAGAGCACGGGAACTTCAAAAGTCAACTTTTATTTTTTCATAATGACCTTACAATTCATGTTTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ACF06468.1	40S ribosomal protein S5	Elaeis guineensis	195	358 bits (920)	4e-97	180/190 (94%)	188/190 (98%)	+1

KEGG Pathway	GO
Contig0376[1 Pathway]	Contig0376[47 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Translation	03010	Ribosome	[PATH:ath03010]	Contig0376	AT2G37270	FAECPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT2G37270	AT2G37270	cell wall	GO:0005618	cell wall
AT2G37270	AT2G37270	chloroplast	GO:0009507	chloroplast
AT2G37270	AT2G37270	membrane	GO:0016020	other membranes
AT2G37270	AT2G37270	plasma membrane	GO:0005886	plasma membrane
AT2G37270	AT2G37270	plasma membrane	GO:0005886	plasma membrane
AT2G37270	AT2G37270	cytosolic ribosome	GO:0022626	cytosol
AT2G37270	AT2G37270	cytosolic ribosome	GO:0022626	cytosol
AT2G37270	AT2G37270	cytosolic ribosome	GO:0022626	ribosome
AT2G37270	AT2G37270	cytosolic ribosome	GO:0022626	ribosome
AT2G37270	AT2G37270	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT2G37270	AT2G37270	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT2G37270	AT2G37270	cytosolic ribosome	GO:0022626	other intracellular components
AT2G37270	AT2G37270	cytosolic ribosome	GO:0022626	other intracellular components
AT2G37270	AT2G37270	ribosome	GO:0005840	ribosome
AT2G37270	AT2G37270	structural constituent of ribosome	GO:0003735	structural molecule activity
AT2G37270	AT2G37270	structural constituent of ribosome	GO:0003735	structural molecule activity
AT2G37270	AT2G37270	translation	GO:0006412	protein metabolism
AT2G37270	AT2G37270	translation	GO:0006412	other cellular processes
AT2G37270	AT2G37270	translation	GO:0006412	other metabolic processes
AT2G37270	AT2G37270	translation	GO:0006412	protein metabolism
AT2G37270	AT2G37270	translation	GO:0006412	other cellular processes
AT2G37270	AT2G37270	translation	GO:0006412	other metabolic processes
AT2G37270	AT2G37270	cytosolic ribosome	GO:0022626	cytosol
AT2G37270	AT2G37270	cytosolic ribosome	GO:0022626	ribosome
AT2G37270	AT2G37270	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT2G37270	AT2G37270	cytosolic ribosome	GO:0022626	other intracellular components
AT2G37270	AT2G37270	cytosolic small ribosomal subunit	GO:0022627	cytosol
AT2G37270	AT2G37270	cytosolic small ribosomal subunit	GO:0022627	ribosome
AT2G37270	AT2G37270	cytosolic small ribosomal subunit	GO:0022627	other cytoplasmic components
AT2G37270	AT2G37270	cytosolic small ribosomal subunit	GO:0022627	other intracellular components
AT2G37270	AT2G37270	cytosolic small ribosomal subunit	GO:0022627	cytosol
AT2G37270	AT2G37270	cytosolic small ribosomal subunit	GO:0022627	ribosome
AT2G37270	AT2G37270	cytosolic small ribosomal subunit	GO:0022627	other cytoplasmic components
AT2G37270	AT2G37270	cytosolic small ribosomal subunit	GO:0022627	other intracellular components
AT2G37270	AT2G37270	cell wall	GO:0005618	cell wall
AT2G37270	AT2G37270	chloroplast	GO:0009507	chloroplast
AT2G37270	AT2G37270	membrane	GO:0016020	other membranes
AT2G37270	AT2G37270	plasma membrane	GO:0005886	plasma membrane
AT2G37270	AT2G37270	plasma membrane	GO:0005886	plasma membrane
AT2G37270	AT2G37270	cytosolic ribosome	GO:0022626	cytosol
AT2G37270	AT2G37270	cytosolic ribosome	GO:0022626	cytosol
AT2G37270	AT2G37270	cytosolic ribosome	GO:0022626	ribosome
AT2G37270	AT2G37270	cytosolic ribosome	GO:0022626	ribosome
AT2G37270	AT2G37270	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT2G37270	AT2G37270	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT2G37270	AT2G37270	cytosolic ribosome	GO:0022626	other intracellular components
AT2G37270	AT2G37270	cytosolic ribosome	GO:0022626	other intracellular components

Gene Network Informations
Gene Network	Interact with..
Contig0376[interact with..]	FAECPM018_A05_PDNR-F FAECPM014_F11_PDNR-F FAECPM018_D05_PDNR-F FAECPM033_G10_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FAECPM018_A05_PDNR-F	635	ref	NP_001045607.1	Os02g0103700	Oryza sativa (japonica cultivar-group)	192	210 bits (535)	6e-53	106/131 (80%)	113/131 (86%)	+3
FAECPM014_F11_PDNR-F	880	gb	ACF06589.1	ribosomal protein	Elaeis guineensis	182	310 bits (793)	2e-82	155/183 (84%)	163/183 (89%)	+2
FAECPM018_D05_PDNR-F	827	sp	O22647.1	RS16_FRIAG RecName: Full=40S ribosomal protein S16		145	253 bits (645)	2e-65	125/138 (90%)	130/138 (94%)	+1
FAECPM033_G10_PDNR-F	599	sp	O22647.1	RS16_FRIAG RecName: Full=40S ribosomal protein S16		145	250 bits (639)	5e-65	124/138 (89%)	129/138 (93%)	+1