Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FAECPM	FAECPM014_D02_PDNR-F	1060

Contig Map:

(ProjectName=FAECPM
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FAECPM014_D02_PDNR-F](Singleton Sequence)

FAECPM014_D02_PDNR-F 1060  bases 
GCTCCCGATACAGCTGCAATTGGACCTAGCTGAGAACTTGAAGGAGAGGAAAGGGTTTCGATTTGCTAGCGAACCAGAAGATCGAGAAGATCGCTCGTAGATCATCGCTCTGAAGTTATAATGGAGTGCGGTGCAGTTTCATCACGGATGAGCGAGGGTTCAGTCGGCACCGAGACAGGTTCAGAGAGGACACTGTCTCCATATGTCACTGGTACATCAGTGTTAGGCCTCAAATATAAAGATGGTGTTATACTGGCTGCTGATATGGGAGGTTCTTATGGTTCAACTCTACGATATAAGAGTGTGGAGCGGATAAAGCCTATTGGTAAACATACTCTTCTTGGTGCCAGTGGAGAAGTCAGCGACTTCCAAGAGATTTTGCGCTATCTTGATGAACTAATCATTTATGATCATATGTGGGATGATGGAAATTCTCTGGGTCCTAAAGAGGTCCATAACTATTTGACTCGGGTTATGTACAATAGACGCAACAAATTCAACCCTTTGTGGAACTCACTTGTTGTAGGTGGAGTTAAAAATGGGCAGAAGTATCTTGGCATGGTTGGTATGATTGGGACTCACTACGAGGATAACCACGTTGCCACCGGCTTTGGAAATCATCTTGCAAGGCCAATTATGCGTGCTGAATGGCATGAGAATTTGAGTTTTGAAGAAGCCGTGAAGCTTCTGGAGAAATGCTTGCTTGTCCTTTTATACCGTGATAGATCATCCATCAATAAATTTCAGATCGCCAAGATAACTGAAGAAGGTGTCACCATTTCTGAACCCTACGCTTTGAAGACATTCTGGGGCTTCTCAGCCTTCCAGAATCCAACCAAGGGAGCTGAAGGATCCTGGTAAAGTTACATTTTAGACCTCCAGGTTGAGATGAACCTTAGACTGCAATTCATGATGCTCTAAATTCCTCTAGTTTTATTATACTCCTCTAAATTGTCATGTTTAACGGTTTTTTTGCATTCAAAATTCAGCAGATTATTTGCACATTTCAACTTTTTAATGAGTTATCTTTTAAAACTCAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002324245.1	predicted protein	Populus trichocarpa	244	375 bits (962)	e-102	171/243 (70%)	207/243 (85%)	+1

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[14 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	03050	Proteasome	[PATH:ath03050]	FAECPM014_D02_PDNR-F	AT1G56450	FAECPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G56450	AT1G56450	response to salt stress	GO:0009651	response to stress
AT1G56450	AT1G56450	response to salt stress	GO:0009651	response to abiotic or biotic stimulus
AT1G56450	AT1G56450	response to cadmium ion	GO:0046686	other biological processes
AT1G56450	AT1G56450	cytosolic ribosome	GO:0022626	cytosol
AT1G56450	AT1G56450	cytosolic ribosome	GO:0022626	ribosome
AT1G56450	AT1G56450	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT1G56450	AT1G56450	cytosolic ribosome	GO:0022626	other intracellular components
AT1G56450	AT1G56450	proteasome core complex	GO:0005839	other intracellular components
AT1G56450	AT1G56450	proteasome core complex	GO:0005839	other intracellular components
AT1G56450	AT1G56450	peptidase activity	GO:0008233	hydrolase activity
AT1G56450	AT1G56450	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT1G56450	AT1G56450	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT1G56450	AT1G56450	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT1G56450	AT1G56450	proteasome complex	GO:0000502	other intracellular components

Gene Network Informations
Gene Network	Interact with..
FAECPM014_D02_PDNR-F[interact with..]	Contig0754

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig0754	1043	ref	XP_002278126.1	PREDICTED: hypothetical protein	Vitis vinifera	235	434 bits (1117)	e-120	221/235 (94%)	229/235 (97%)	+2