Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FAECPM	FAECPM014_H09_PDNR-F	885

Contig Map:

(ProjectName=FAECPM
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FAECPM014_H09_PDNR-F](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ACG47588.1	60S ribosomal protein L7a	Zea mays	255	380 bits (977)	e-104	187/216 (86%)	194/216 (89%)	+2

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[22 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Translation	03010	Ribosome	[PATH:ath03010]	FAECPM014_H09_PDNR-F	AT3G62870	FAECPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G62870	AT3G62870	membrane	GO:0016020	other membranes
AT3G62870	AT3G62870	plasma membrane	GO:0005886	plasma membrane
AT3G62870	AT3G62870	cytosolic ribosome	GO:0022626	cytosol
AT3G62870	AT3G62870	cytosolic ribosome	GO:0022626	cytosol
AT3G62870	AT3G62870	cytosolic ribosome	GO:0022626	ribosome
AT3G62870	AT3G62870	cytosolic ribosome	GO:0022626	ribosome
AT3G62870	AT3G62870	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT3G62870	AT3G62870	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT3G62870	AT3G62870	cytosolic ribosome	GO:0022626	other intracellular components
AT3G62870	AT3G62870	cytosolic ribosome	GO:0022626	other intracellular components
AT3G62870	AT3G62870	structural constituent of ribosome	GO:0003735	structural molecule activity
AT3G62870	AT3G62870	translation	GO:0006412	protein metabolism
AT3G62870	AT3G62870	translation	GO:0006412	other cellular processes
AT3G62870	AT3G62870	translation	GO:0006412	other metabolic processes
AT3G62870	AT3G62870	cytosolic large ribosomal subunit	GO:0022625	cytosol
AT3G62870	AT3G62870	cytosolic large ribosomal subunit	GO:0022625	ribosome
AT3G62870	AT3G62870	cytosolic large ribosomal subunit	GO:0022625	other cytoplasmic components
AT3G62870	AT3G62870	cytosolic large ribosomal subunit	GO:0022625	other intracellular components
AT3G62870	AT3G62870	cytosolic ribosome	GO:0022626	cytosol
AT3G62870	AT3G62870	cytosolic ribosome	GO:0022626	ribosome
AT3G62870	AT3G62870	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT3G62870	AT3G62870	cytosolic ribosome	GO:0022626	other intracellular components

Gene Network Informations
Gene Network	Interact with..
FAECPM014_H09_PDNR-F[interact with..]	Contig0320 Contig0453 FAECPM038_G07_PDNR-F FAECPM018_A05_PDNR-F FAECPM028_E10_PDNR-F Contig0754 Contig0428 FAECPM024_B12_PDNR-F FAECPM014_H09_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig0320	1111	gb	AAL83708.1	putative ascorbate peroxidase	Capsicum annuum	250	392 bits (1006)	e-107	193/250 (77%)	207/250 (82%)	+2
Contig0453	727	ref	NP_001064799.1	Os10g0465800	Oryza sativa (japonica cultivar-group)	164	318 bits (815)	3e-85	151/164 (92%)	158/164 (96%)	+1
FAECPM038_G07_PDNR-F	627	ref	XP_002531173.1	60S ribosomal protein L21, putative	Ricinus communis	164	243 bits (620)	1e-62	113/125 (90%)	121/125 (96%)	+1
FAECPM018_A05_PDNR-F	635	ref	NP_001045607.1	Os02g0103700	Oryza sativa (japonica cultivar-group)	192	210 bits (535)	6e-53	106/131 (80%)	113/131 (86%)	+3
FAECPM028_E10_PDNR-F	766	ref	NP_177545.1	60S ribosomal protein L6 (RPL6C)	Arabidopsis thaliana	233	238 bits (608)	3e-61	129/203 (63%)	140/203 (68%)	+3
Contig0754	1043	ref	XP_002278126.1	PREDICTED: hypothetical protein	Vitis vinifera	235	434 bits (1117)	e-120	221/235 (94%)	229/235 (97%)	+2
Contig0428	1350	gb	ACF06450.1	ribosomal protein L10	Elaeis guineensis	321	484 bits (1247)	e-135	250/321 (77%)	269/321 (83%)	+3
FAECPM024_B12_PDNR-F	987	gb	AAX22235.1	mitochondrial manganese superoxide dismutase	Nelumbo nucifera	233	382 bits (981)	e-104	185/236 (78%)	199/236 (84%)	+2
FAECPM014_H09_PDNR-F	885	gb	ACG47588.1	60S ribosomal protein L7a	Zea mays	255	380 bits (977)	e-104	187/216 (86%)	194/216 (89%)	+2