Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
454	contig01118	424

Contig Map:

(ProjectName=454
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[contig01118](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
emb	CAO68741.1	unnamed protein product	Vitis vinifera	320	129 bits (325)	2e-31	69/106 (65%)	74/106 (69%)	-1

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[15 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Transcription	03040	Spliceosome	[PATH:ath03040]	contig01118	AT1G09760	454

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G09760	AT1G09760	chloroplast	GO:0009507	chloroplast
AT1G09760	AT1G09760	nucleolus	GO:0005730	nucleus
AT1G09760	AT1G09760	nucleolus	GO:0005730	other intracellular components
AT1G09760	AT1G09760	nucleus	GO:0005634	nucleus
AT1G09760	AT1G09760	Cajal body	GO:0015030	nucleus
AT1G09760	AT1G09760	Cajal body	GO:0015030	other intracellular components
AT1G09760	AT1G09760	cytoplasm	GO:0005737	other cytoplasmic components
AT1G09760	AT1G09760	nucleoplasm	GO:0005654	nucleus
AT1G09760	AT1G09760	nucleoplasm	GO:0005654	other intracellular components
AT1G09760	AT1G09760	response to cold	GO:0009409	response to stress
AT1G09760	AT1G09760	response to cold	GO:0009409	response to stress
AT1G09760	AT1G09760	response to cold	GO:0009409	response to abiotic or biotic stimulus
AT1G09760	AT1G09760	response to cold	GO:0009409	response to abiotic or biotic stimulus
AT1G09760	AT1G09760	"nuclear mRNA splicing, via spliceosome"	GO:0000398	other cellular processes
AT1G09760	AT1G09760	"nuclear mRNA splicing, via spliceosome"	GO:0000398	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
contig01118[interact with..]	contig01118 FXQQ4OB01BTT6J FXQQ4OB01CWUQL FXQQ4OB01DR0ZF FXQQ4OB02FXWA7 FXQQ4OB02H7XYV FXQQ4OB02HMBSP FXQQ4OB02JK8VA contig05573 FXQQ4OB02FY0WZ contig06565 FXQQ4OB02FI0CO contig04813 contig06120 FXQQ4OB02GQ4U4 FXQQ4OB01APNS1 FXQQ4OB01CQBCR FXQQ4OB01D968Z

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
contig01118	424	emb	CAO68741.1	unnamed protein product	Vitis vinifera	320	129 bits (325)	2e-31	69/106 (65%)	74/106 (69%)	-1
FXQQ4OB01BTT6J	244	ref	XP_002518663.1	U520, putative	Ricinus communis	1809	119 bits (299)	8e-26	53/80 (66%)	69/80 (86%)	+2
FXQQ4OB01CWUQL	238	ref	XP_002518663.1	U520, putative	Ricinus communis	1809	154 bits (389)	3e-36	69/74 (93%)	73/74 (98%)	-3
FXQQ4OB01DR0ZF	235	ref	XP_002518663.1	U520, putative	Ricinus communis	1809	146 bits (369)	6e-34	71/78 (91%)	76/78 (97%)	-1
FXQQ4OB02FXWA7	246	emb	CAO64800.1	unnamed protein product	Vitis vinifera	2072	138 bits (348)	2e-31	69/81 (85%)	74/81 (91%)	+3
FXQQ4OB02H7XYV	237	ref	XP_002518663.1	U520, putative	Ricinus communis	1809	146 bits (369)	6e-34	71/78 (91%)	76/78 (97%)	-3
FXQQ4OB02HMBSP	174	gb	EEE56150.1	hypothetical protein OsJ_05035	Oryza sativa Japonica Group	2238	118 bits (296)	2e-25	54/57 (94%)	56/57 (98%)	+1
FXQQ4OB02JK8VA	244	gb	EEE56150.1	hypothetical protein OsJ_05035	Oryza sativa Japonica Group	2238	119 bits (298)	1e-25	60/80 (75%)	63/80 (78%)	-3
contig05573	303	ref	XP_002308466.1	predicted protein	Populus trichocarpa	80	140 bits (352)	6e-32	71/81 (87%)	76/81 (93%)	+3
FXQQ4OB02FY0WZ	260	ref	XP_002520620.1	Pre-mRNA-splicing factor isy-1, putative	Ricinus communis	302	159 bits (403)	7e-38	74/86 (86%)	81/86 (94%)	+3
contig06565	250	gb	ABD23908.1	U1 small nuclear ribonucleoprotein 70K	Oryza sativa (japonica cultivar-group)	463	153 bits (387)	5e-36	69/80 (86%)	76/80 (95%)	+2
FXQQ4OB02FI0CO	256	emb	CAO22864.1	unnamed protein product	Vitis vinifera	393	129 bits (323)	1e-28	64/74 (86%)	68/74 (91%)	+3
contig04813	485	ref	NP_001046068.1	Os02g0177500	Oryza sativa (japonica cultivar-group)	86	158 bits (400)	2e-37	75/77 (97%)	77/77 (100%)	+1
contig06120	253	ref	XP_002513552.1	splicing factor 3a, putative	Ricinus communis	459	123 bits (308)	7e-27	59/85 (69%)	68/85 (80%), Gaps = 1/85 (1%)	-1
FXQQ4OB02GQ4U4	258	emb	CAO48518.1	unnamed protein product	Vitis vinifera	512	115 bits (287)	2e-24	52/78 (66%)	56/78 (71%)	+2
FXQQ4OB01APNS1	232	emb	CAO16590.1	unnamed protein product	Vitis vinifera	888	100 bits (248)	7e-20	49/76 (64%)	63/76 (82%)	+3
FXQQ4OB01CQBCR	238	emb	CAO16590.1	unnamed protein product	Vitis vinifera	888	87.8 bits (216)	1e-17	42/64 (65%)	55/64 (85%)	-2
FXQQ4OB01D968Z	235	emb	CAO16590.1	unnamed protein product	Vitis vinifera	888	94.0 bits (232)	5e-18	46/73 (63%)	60/73 (82%)	+3