Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	FPTEVCPM002_C11_PDNR-F	1250

Contig Map:

(ProjectName=FPTEVCPM
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FPTEVCPM002_C11_PDNR-F](Singleton Sequence)

FPTEVCPM002_C11_PDNR-F 1250  bases 
ATTCGTCTCCCCTGTTTACAGACCCCATTGTTGTTCCTCTCTCTCATTCTATCTCTCTTCACCCGTCTCATTTCCCATGGGGGAAGCGAACGGGAAGGCTTCAGATCTGAAAGCCGGCTTCGTGCAGATCTACTCCCAGCTAAAATCCGAGCTCCTCGAGGACCCAGCCTTCAGTTTCACCGAAGATTCTCGGCAATGGATCGATAGGATGCTGGACTACAATGTACCAGGAGGGAAGCTCAATCGTGGTATCTCCGTGGTTGATAGCTTTGAAATTCTTAAAGGAAGCCAACTCTGCCATGATGAGTTTTTCCGTGCAGGTGTACTTGGCTGGTGTGTTGAATGGCTTCAAGCATATTTTCTTGTTCTTGATGATATGATGGACAATTCTTACTCGAGGCGTGGTCAGCCTTGCTGGTTTAGATTACCTGAGGTTGGTACTATTGCTGCAAATGATGGAATTATACTTCGTAACCACATACCTAGGATTCTCCATCGTCATTTCAGGGATAAAACTTACTATGCTCATCTCCTGGACCTATTTAATGAGGTTGAATTCCAGACAGCTTCAGGTCAGATGCTGGATCTGATAACTACTCATGAAGGAAAGAAGGATCTATCCAAATATAAAATGCCTGTGTACAATCGTATTGTTCAGTACAAGACGGCGTATTATTCATTTTATCTTCCTGTTGCATGTGCCTTACTAATGGCTGGTGAAAATTTGGACAACTACGTTGATTTAAAAAGAGTTCTTGTGGAGATGGGAACATACTTTCAAGTACAGGATGATTACTTGGACTGCTTTGGTGATCCTTCACTTATTGGAAAGATTGGAACTGACATTGAAGATTTTAAGTGCTCTTGGCTTATTGTGCAAGCGCTTGAAATAGCTGATGAAAACCAACTAAAATTTCTGGAGGAGACTATGGGAATCCAGATCCAGCTTGTGTTGCCAAAGTTAATCCCTTTACATGATCTCATCTCAGCAAATTTCGGAGTACGAGCGATCGAGCTACGAGCAGCTATCTCTCATAGAGCTCAGCAGCAACAGTCAGAGTACTCAGTCTTCTGCTAGATCTAAAAGACGAGTAGTCTTCTGCATGCTTCATGTAAGTAATATTGTAACCCAGCAGACCTCAGCATTCTTCTGGGTTATTTGACAATGATTTATGTGATTGGCACACTGATGTATATTCTGCTGAATCGTCAGTGGCTGTCTTTCGCGAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ACJ38671.1	farnesyl pyrophosphate synthase	Chimonanthus praecox	358	466 bits (1198)	e-129	218/286 (76%)	250/286 (87%), Gaps = 1/286 (0%)	+2

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[18 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Metabolism of Terpenoids and Polyketides	00900	Terpenoid backbone biosynthesis	[PATH:ath00900]	FPTEVCPM002_C11_PDNR-F	AT5G47770	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G47770	AT5G47770	isoprenoid biosynthetic process	GO:0008299	other cellular processes
AT5G47770	AT5G47770	isoprenoid biosynthetic process	GO:0008299	other metabolic processes
AT5G47770	AT5G47770	dimethylallyltranstransferase activity	GO:0004161	transferase activity
AT5G47770	AT5G47770	geranyltranstransferase activity	GO:0004337	transferase activity
AT5G47770	AT5G47770	farnesyl diphosphate biosynthetic process	GO:0045337	other cellular processes
AT5G47770	AT5G47770	farnesyl diphosphate biosynthetic process	GO:0045337	other metabolic processes
AT5G47770	AT5G47770	isoprenoid biosynthetic process	GO:0008299	other cellular processes
AT5G47770	AT5G47770	isoprenoid biosynthetic process	GO:0008299	other metabolic processes
AT5G47770	AT5G47770	dimethylallyltranstransferase activity	GO:0004161	transferase activity
AT5G47770	AT5G47770	geranyltranstransferase activity	GO:0004337	transferase activity
AT5G47770	AT5G47770	farnesyl diphosphate biosynthetic process	GO:0045337	other cellular processes
AT5G47770	AT5G47770	farnesyl diphosphate biosynthetic process	GO:0045337	other metabolic processes
AT5G47770	AT5G47770	isoprenoid biosynthetic process	GO:0008299	other cellular processes
AT5G47770	AT5G47770	isoprenoid biosynthetic process	GO:0008299	other metabolic processes
AT5G47770	AT5G47770	dimethylallyltranstransferase activity	GO:0004161	transferase activity
AT5G47770	AT5G47770	geranyltranstransferase activity	GO:0004337	transferase activity
AT5G47770	AT5G47770	farnesyl diphosphate biosynthetic process	GO:0045337	other cellular processes
AT5G47770	AT5G47770	farnesyl diphosphate biosynthetic process	GO:0045337	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
FPTEVCPM002_C11_PDNR-F[interact with..]	Contig0087 FPTEVCPM002_C11_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig0087	1026	gb	AAL82595.1	AF470318_1 farnesyl pyrophosphare synthase	Musa acuminata	357	464 bits (1195)	e-129	222/280 (79%)	248/280 (88%)	+2
FPTEVCPM002_C11_PDNR-F	1250	gb	ACJ38671.1	farnesyl pyrophosphate synthase	Chimonanthus praecox	358	466 bits (1198)	e-129	218/286 (76%)	250/286 (87%), Gaps = 1/286 (0%)	+2