Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	Contig0087	1026

Contig Map:

(ProjectName=FPTEVCPM SequenceName=Contig0087):
FPTEVCPM091_A12_PDNR-F:
FPTEVCPM089_D01_PDNR-F:

Sequences View:[Contig0087](Contig Seguence)

1026 bases 
AATTCTTAAAGGAAGCCAACTCTGCCATGATGAGTTTTTCCGTGCAGGTGTACTTGGCTGGTGTGTTGAATGGCTTCAAGCATATTTTCTTGTTCTTGATGATATGATGGACAATTCTTACACGAGGCGTGGTCAGCCTTGCTGGTTTAGATTACCTGAGGTTGGTACTATTGCTGCAAATGATGGAATTATACTTCGTAACCACATACCTAGGATTCTCCATCGTCATTTCAGGGATAAAACTTACTATGCTCATCTCCTGGACCTATTTAATGAGGTTGAATTCCAGACAGCTTCAGGTCAGATGCTGGATCTGATAACTACTCATGAAGGAAAGAAGGATCTATCCAAATATAAAATGCCTGTGTACAATCGTATTGTTCAGTACAAGACGGCGTATTATTCATTTTATCTTCCTGTTGCATGTGCCTTACTAATGGCTGGTGAAAATTTGGACAACTACGTTGATTTAAAAAGAGTTCTTGTGGAGATGGGAACATACTTTCAAGTACAGGATGATTACTTGGACTGCTTTGGTGATCCTTCACTTATTGGAAAGATTGGAACTGACATTGAAGATTTTAAGTGCTCTTGGCTTATTGTGCAAGCGCTTGAAATAGCTGATGAAAACCAACTAAAATTTTTGGAGGAGAACTATGGGAATCCAGATCCAGCTTGTGTTGCCAAAGTTAAATCCCTTTACAATGATCTCAATCTCCAGGCAAAATTTTCGGAGTACGAGCGATCGAGCTACGAGCAGCTAATCTCCTCCATAGAAGCTCAGCCAAGCAAACAAGTCCAGGAGGTACTCAAGTCTTTCCTGCATAAGATCTATAAAAGACAGAAGTAGAGTTCTTCTGCATGCCTCCATGTTAAGGATAATAATGTTATACCCAAGCAAGAACACTTCAGTCTATTCTTTCCTGTGTTTTATTTGTACCAATATGTAATTTTATAATGTTTGATTTTTGGACAAAACCTGCAATTTGTATTTTTATTTTTCTTCCCCTTGAATTTCAGTTCAGA

Sequences View:[Contig0087](Singleton Sequence)

Contig0087 1026  bases 
AATTCTTAAAGGAAGCCAACTCTGCCATGATGAGTTTTTCCGTGCAGGTGTACTTGGCTGGTGTGTTGAATGGCTTCAAGCATATTTTCTTGTTCTTGATGATATGATGGACAATTCTTACACGAGGCGTGGTCAGCCTTGCTGGTTTAGATTACCTGAGGTTGGTACTATTGCTGCAAATGATGGAATTATACTTCGTAACCACATACCTAGGATTCTCCATCGTCATTTCAGGGATAAAACTTACTATGCTCATCTCCTGGACCTATTTAATGAGGTTGAATTCCAGACAGCTTCAGGTCAGATGCTGGATCTGATAACTACTCATGAAGGAAAGAAGGATCTATCCAAATATAAAATGCCTGTGTACAATCGTATTGTTCAGTACAAGACGGCGTATTATTCATTTTATCTTCCTGTTGCATGTGCCTTACTAATGGCTGGTGAAAATTTGGACAACTACGTTGATTTAAAAAGAGTTCTTGTGGAGATGGGAACATACTTTCAAGTACAGGATGATTACTTGGACTGCTTTGGTGATCCTTCACTTATTGGAAAGATTGGAACTGACATTGAAGATTTTAAGTGCTCTTGGCTTATTGTGCAAGCGCTTGAAATAGCTGATGAAAACCAACTAAAATTTTTGGAGGAGAACTATGGGAATCCAGATCCAGCTTGTGTTGCCAAAGTTAAATCCCTTTACAATGATCTCAATCTCCAGGCAAAATTTTCGGAGTACGAGCGATCGAGCTACGAGCAGCTAATCTCCTCCATAGAAGCTCAGCCAAGCAAACAAGTCCAGGAGGTACTCAAGTCTTTCCTGCATAAGATCTATAAAAGACAGAAGTAGAGTTCTTCTGCATGCCTCCATGTTAAGGATAATAATGTTATACCCAAGCAAGAACACTTCAGTCTATTCTTTCCTGTGTTTTATTTGTACCAATATGTAATTTTATAATGTTTGATTTTTGGACAAAACCTGCAATTTGTATTTTTATTTTTCTTCCCCTTGAATTTCAGTTCAGA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	AAL82595.1	AF470318_1 farnesyl pyrophosphare synthase	Musa acuminata	357	464 bits (1195)	e-129	222/280 (79%)	248/280 (88%)	+2

KEGG Pathway	GO
Contig0087[1 Pathway]	Contig0087[18 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Metabolism of Terpenoids and Polyketides	00900	Terpenoid backbone biosynthesis	[PATH:ath00900]	Contig0087	AT5G47770	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G47770	AT5G47770	isoprenoid biosynthetic process	GO:0008299	other cellular processes
AT5G47770	AT5G47770	isoprenoid biosynthetic process	GO:0008299	other metabolic processes
AT5G47770	AT5G47770	dimethylallyltranstransferase activity	GO:0004161	transferase activity
AT5G47770	AT5G47770	geranyltranstransferase activity	GO:0004337	transferase activity
AT5G47770	AT5G47770	farnesyl diphosphate biosynthetic process	GO:0045337	other cellular processes
AT5G47770	AT5G47770	farnesyl diphosphate biosynthetic process	GO:0045337	other metabolic processes
AT5G47770	AT5G47770	isoprenoid biosynthetic process	GO:0008299	other cellular processes
AT5G47770	AT5G47770	isoprenoid biosynthetic process	GO:0008299	other metabolic processes
AT5G47770	AT5G47770	dimethylallyltranstransferase activity	GO:0004161	transferase activity
AT5G47770	AT5G47770	geranyltranstransferase activity	GO:0004337	transferase activity
AT5G47770	AT5G47770	farnesyl diphosphate biosynthetic process	GO:0045337	other cellular processes
AT5G47770	AT5G47770	farnesyl diphosphate biosynthetic process	GO:0045337	other metabolic processes
AT5G47770	AT5G47770	isoprenoid biosynthetic process	GO:0008299	other cellular processes
AT5G47770	AT5G47770	isoprenoid biosynthetic process	GO:0008299	other metabolic processes
AT5G47770	AT5G47770	dimethylallyltranstransferase activity	GO:0004161	transferase activity
AT5G47770	AT5G47770	geranyltranstransferase activity	GO:0004337	transferase activity
AT5G47770	AT5G47770	farnesyl diphosphate biosynthetic process	GO:0045337	other cellular processes
AT5G47770	AT5G47770	farnesyl diphosphate biosynthetic process	GO:0045337	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
Contig0087[interact with..]	Contig0087 FPTEVCPM002_C11_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig0087	1026	gb	AAL82595.1	AF470318_1 farnesyl pyrophosphare synthase	Musa acuminata	357	464 bits (1195)	e-129	222/280 (79%)	248/280 (88%)	+2
FPTEVCPM002_C11_PDNR-F	1250	gb	ACJ38671.1	farnesyl pyrophosphate synthase	Chimonanthus praecox	358	466 bits (1198)	e-129	218/286 (76%)	250/286 (87%), Gaps = 1/286 (0%)	+2