Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	Contig1237	1126

Contig Map:

(ProjectName=FPTEVCPM SequenceName=Contig1237):
FPTEVCPM074_H02_PDNR-F:
FPTEVCPM062_D08_PDNR-F:

Sequences View:[Contig1237](Contig Seguence)

1126 bases 
AAGCAGTGGTATCAACGCAGAGTAGCCATTACGGCCGGGGCTCTCTTACCAGGCGATCATCACAACAGTGATCAGCGTGAGGTATATTACATCTCTTCCAAACCTTATTCTGACCTGCGAGATTCAGGGCTTTGGTTTTTCGGATTCATCAACCTGCATCAAAGGCTCTTGAACAATCCCACTTTACATGATCGAGAATGTTTCAGAAATCACTTGCCAATCCTTTCATCTCGCCGATTCCTGTCTTCTCGTCCAAACCCAGAAGCGCAAGCTTCTCTAATCGGTCGCTGGTAGTTCTATCGCATTCCGTTGATACCTCAGAGACGGTGGAAACGAGCTCCAGCATGCCGCCTTCCACGCTTTTCGATTCCGCCGCTGTTTCATCGGGTAAGGCCTCGATGTATCCGGGAGGGATGGGGGTGCATACTGGTAGAGATCTAAGTGTGAAGAAGCCGGGATGGCTCCGTCAGAGGGCGCCACAGGGGGAGAAGTTTTCCAAGTTGCAGGAGTCGCTTTCTGAGTTAAAGCTAAATACAGTGTGCGTGGAGGCTCAATGCCCTAATATTGGGGAGTGCTGGAATGGCGGTGGAGGGGCAGGAGGAGAAGGAGATGGTATTGCAACTGCAACCATCATGCTTCTAGGGGATACTTGTACTCGTGGCTGTAGATTTTGTGCTGTAAAAACAAGCAGAAATCCTGCTCCTCCAGATCCCATGGAACCTCAGAATACCGCCAAGGCAATTGCGAGCTGGGGCGTGGACTATGTTGTATTGACAAGTGTTGATCGAGATGACTTATCTGATGGTGGAAGTGGTCACTTTGCAGAGACAGTCAAGGCTTTGAAGAATCTCAAACCTGAAATACTTGTTGAGTGTCTAACCTCTGATTTCGGTGGTGATCTAGAAGCTGTGTTCAAACTTGTCCATTCTGGGCTGGACGTCTTTGCTCATAACATTGAAACTGTGAAACGCCTTCAAAGAATTGTCCGAGATCCTCGAGCAAGGTATGACCAGAGTTTGTCTGTTCTAAAGCATGGGAAACTTTGCAAAGAAGGGATGATTTCAAAGTTCTTCTATCCTGCTCGGTCCTAGAGAATCTGACGATGAAGCAAAGGAAGCTTTGGTCT

Sequences View:[Contig1237](Singleton Sequence)

Contig1237 1126  bases 
AAGCAGTGGTATCAACGCAGAGTAGCCATTACGGCCGGGGCTCTCTTACCAGGCGATCATCACAACAGTGATCAGCGTGAGGTATATTACATCTCTTCCAAACCTTATTCTGACCTGCGAGATTCAGGGCTTTGGTTTTTCGGATTCATCAACCTGCATCAAAGGCTCTTGAACAATCCCACTTTACATGATCGAGAATGTTTCAGAAATCACTTGCCAATCCTTTCATCTCGCCGATTCCTGTCTTCTCGTCCAAACCCAGAAGCGCAAGCTTCTCTAATCGGTCGCTGGTAGTTCTATCGCATTCCGTTGATACCTCAGAGACGGTGGAAACGAGCTCCAGCATGCCGCCTTCCACGCTTTTCGATTCCGCCGCTGTTTCATCGGGTAAGGCCTCGATGTATCCGGGAGGGATGGGGGTGCATACTGGTAGAGATCTAAGTGTGAAGAAGCCGGGATGGCTCCGTCAGAGGGCGCCACAGGGGGAGAAGTTTTCCAAGTTGCAGGAGTCGCTTTCTGAGTTAAAGCTAAATACAGTGTGCGTGGAGGCTCAATGCCCTAATATTGGGGAGTGCTGGAATGGCGGTGGAGGGGCAGGAGGAGAAGGAGATGGTATTGCAACTGCAACCATCATGCTTCTAGGGGATACTTGTACTCGTGGCTGTAGATTTTGTGCTGTAAAAACAAGCAGAAATCCTGCTCCTCCAGATCCCATGGAACCTCAGAATACCGCCAAGGCAATTGCGAGCTGGGGCGTGGACTATGTTGTATTGACAAGTGTTGATCGAGATGACTTATCTGATGGTGGAAGTGGTCACTTTGCAGAGACAGTCAAGGCTTTGAAGAATCTCAAACCTGAAATACTTGTTGAGTGTCTAACCTCTGATTTCGGTGGTGATCTAGAAGCTGTGTTCAAACTTGTCCATTCTGGGCTGGACGTCTTTGCTCATAACATTGAAACTGTGAAACGCCTTCAAAGAATTGTCCGAGATCCTCGAGCAAGGTATGACCAGAGTTTGTCTGTTCTAAAGCATGGGAAACTTTGCAAAGAAGGGATGATTTCAAAGTTCTTCTATCCTGCTCGGTCCTAGAGAATCTGACGATGAAGCAAAGGAAGCTTTGGTCT

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002329366.1	predicted protein	Populus trichocarpa	397	332 bits (852)	1e-91	166/224 (74%)	181/224 (80%), Gaps = 2/224 (0%)	+3

KEGG Pathway	GO
Contig1237[1 Pathway]	Contig1237[24 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Metabo lism of Cofactors and Vitamins	00785	Lipoic acid metabolism	[PATH:ath00785]	Contig1237	AT5G08415	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G08415	AT5G08415	chloroplast	GO:0009507	chloroplast
AT5G08415	AT5G08415	catalytic activity	GO:0003824	other enzyme activity
AT5G08415	AT5G08415	lipoate synthase activity	GO:0016992	transferase activity
AT5G08415	AT5G08415	lipoate synthase activity	GO:0016992	other enzyme activity
AT5G08415	AT5G08415	lipoate biosynthetic process	GO:0009107	other cellular processes
AT5G08415	AT5G08415	lipoate biosynthetic process	GO:0009107	other metabolic processes
AT5G08415	AT5G08415	metabolic process	GO:0008152	other metabolic processes
AT5G08415	AT5G08415	iron-sulfur cluster binding	GO:0051536	other binding
AT5G08415	AT5G08415	"4 iron, 4 sulfur cluster binding"	GO:0051539	other binding
AT5G08415	AT5G08415	lipoic acid biosynthetic process	GO:0009105	other cellular processes
AT5G08415	AT5G08415	lipoic acid biosynthetic process	GO:0009105	other metabolic processes
AT5G08415	AT5G08415	lipoic acid synthase activity	GO:0017140	other enzyme activity
AT5G08415	AT5G08415	chloroplast	GO:0009507	chloroplast
AT5G08415	AT5G08415	catalytic activity	GO:0003824	other enzyme activity
AT5G08415	AT5G08415	lipoate synthase activity	GO:0016992	transferase activity
AT5G08415	AT5G08415	lipoate synthase activity	GO:0016992	other enzyme activity
AT5G08415	AT5G08415	lipoate biosynthetic process	GO:0009107	other cellular processes
AT5G08415	AT5G08415	lipoate biosynthetic process	GO:0009107	other metabolic processes
AT5G08415	AT5G08415	metabolic process	GO:0008152	other metabolic processes
AT5G08415	AT5G08415	iron-sulfur cluster binding	GO:0051536	other binding
AT5G08415	AT5G08415	"4 iron, 4 sulfur cluster binding"	GO:0051539	other binding
AT5G08415	AT5G08415	lipoic acid biosynthetic process	GO:0009105	other cellular processes
AT5G08415	AT5G08415	lipoic acid biosynthetic process	GO:0009105	other metabolic processes
AT5G08415	AT5G08415	lipoic acid synthase activity	GO:0017140	other enzyme activity

Gene Network Informations
Gene Network	Interact with..
Contig1237[interact with..]	FPTEVCPM068_C03_PDNR-F FPTEVCPM003_B01_pDNR-F FPTEVCPM033_H09_PDNR-F FPTEVCPM067_B05_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FPTEVCPM068_C03_PDNR-F	1102	gb	AAS68103.1	minichromosomal maintenance factor	Triticum aestivum	955	560 bits (1444)	e-158	284/360 (78%)	318/360 (88%), Gaps = 2/360 (0%)	+1
FPTEVCPM003_B01_pDNR-F	1127	emb	CBI25992.1	unnamed protein product	Vitis vinifera	212	203 bits (517)	3e-50	93/117 (79%)	104/117 (88%)	+3
FPTEVCPM033_H09_PDNR-F	745	ref	XP_002464024.1	hypothetical protein SORBIDRAFT_01g010800	Sorghum bicolor	653	155 bits (391)	5e-36	69/95 (72%)	84/95 (88%)	+3
FPTEVCPM067_B05_PDNR-F	1039	ref	XP_002464024.1	hypothetical protein SORBIDRAFT_01g010800	Sorghum bicolor	653	371 bits (952)	e-101	176/219 (80%)	203/219 (92%)	+3