Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	FPTEVCPM003_B01_pDNR-F	1127

Contig Map:

(ProjectName=FPTEVCPM
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FPTEVCPM003_B01_pDNR-F](Singleton Sequence)

FPTEVCPM003_B01_pDNR-F 1127  bases 
GGCGGAAGGCAACAACGGGATCGCGGCGTACCGAGACCAGAAATTCCCATCTTTCTTCTCCTTCCGCTCGGCTCCTACCTGAAGTAAGGGTTGAACATTATTATCCAAATATGGATGGAGGGCTAGCTAACTTTAAGAAATGGAATATAATCTATCCTATCTACATAAATTCAAAGAAGACTATAGCTGAGGGGCGGAGGATCGGTGCTTCCAAGGCATGCGAAAATCCTACATGCCTTGAGATTGGAGACTGTTGTAAACACCTCAAAATTCCTTGTGCTATTGAGCTTGATAAGGCGTACCCTCGAGATTTCATGCAGCGGGGTCGAGTTAGGGTTTTGCTGAAAAGGGAAGATGGATCTCTTTACAACCCTGCAATTCATTCAAAGAAGCACCTGATGCTTCAGGTGGCTGAGTTGGTGCCTCGGCATCCTGGGAGAGTGAAGAAGCAGGAGCCTGCAAGTACAGCCACTGCTGCTGGGACTTCAAAATCAGGAAAGGGTGGGAAGAAGAAGAAGAAATGAACAATGTATGTTTAAAGTCAAGCCTAGTTTTAGAAAGCACTAAAATCGTGTTTTTATGGGGTATCAAATATTATAGTCTGCAAATTGCTTAATTGCATGCTCTAAATTCTTTGAGACACTCAATCATAGCAAACAACTTGATTTTTTTTTTGCCACTTTGGCCTAAATGTTCTGTAGAGCTTGTTCATGCACCATGCTCCCTGCCATGTCATACTTATATGATGTGGACTGAAAAGCCTCGCATCTCTAATATATATTTTTTTGTTTTTTTTTTATTGATTTCAATGGAAAATGTACTTATTCTTGTCGACTCTCATCGGGCCTATTAGAATGTTTCTAGACCATTAGTTTGGCGCGCGGGCCCCATTACGTACGTGATACATCGCTCTAGATGCTTTCTAGACAATCCTGGTGGATGACTAGGTGCTTGGATTTTAGCCAATATAGAACCGACCTGGTGCATACGAGCGCTCTGAACTAATCCAGACGTAGTTTTTAGCCATTACTAGATCTATGAGAGACGCCAGCAGCACGATTCAAATGCGCTCTGACGGCATTATATGGACATACAGTTGATCATTCAGACTTCTATCGAATTGCAGC

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
emb	CBI25992.1	unnamed protein product	Vitis vinifera	212	203 bits (517)	3e-50	93/117 (79%)	104/117 (88%)	+3

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[10 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	03060	Protein export	[PATH:ath03060]	FPTEVCPM003_B01_pDNR-F	AT1G48160	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT1G48160	AT1G48160	7S RNA binding	GO:0008312	DNA or RNA binding
AT1G48160	AT1G48160	SRP-dependent cotranslational protein targeting to membrane	GO:0006614	transport
AT1G48160	AT1G48160	SRP-dependent cotranslational protein targeting to membrane	GO:0006614	other cellular processes
AT1G48160	AT1G48160	signal recognition particle	GO:0048500	other cytoplasmic components
AT1G48160	AT1G48160	signal recognition particle	GO:0048500	other intracellular components
AT1G48160	AT1G48160	"signal recognition particle, endoplasmic reticulum targeting"	GO:0005786	other cytoplasmic components
AT1G48160	AT1G48160	"signal recognition particle, endoplasmic reticulum targeting"	GO:0005786	other intracellular components
AT1G48160	AT1G48160	7S RNA binding	GO:0008312	DNA or RNA binding
AT1G48160	AT1G48160	protein targeting	GO:0006605	transport
AT1G48160	AT1G48160	protein targeting	GO:0006605	other cellular processes

Gene Network Informations
Gene Network	Interact with..
FPTEVCPM003_B01_pDNR-F[interact with..]	Not found!