Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPTEVCPM	Contig0889	1187

Contig Map:

(ProjectName=FPTEVCPM SequenceName=Contig0889):
FPTEVCPM044_B12_PDNR-F:
FPTEVCPM083_G10_PDNR-F:
FPTEVCPM065_A01_PDNR-F:

Sequences View:[Contig0889](Contig Seguence)

1187 bases 
GCGTGGGGGTCATCGTTCCCTGCCGTGCTCTTTTTTTTCGCAACGGTAGCTGGGATCCGCCTCCCAATCGCCAAGCAATGGTGAAGTCATACCCGGTGGTGAGCGAGGAACACCTTAAAGCGGTTGATAAGTGTCGGAAGAAGCTCCGAGGTTTCATCGCCGAGAAGAACTGTGCTCCGCTCATGCTTCGACTGGCTTGGCACTCGGCTGGGACGTACGATGTCAAGACGAAGACGGGAGGGCCGTTCGGGACGATAAGGCACCCGGATGAGCTTGCACACGGGGCGAACAACGGCCTTAGTATCGCTGTGGGGTTGCTGGAGCCGATCAAGGAGCAGTTTCCGATCCTTTCGTATGCCGACTTCTACCAGCTTGCTGGAGTTGTTGCTGTTGAAGTCACTGGTGGACCTGAGGTTCCCTTCCATCCCGGAAGGGAGGATAAGCCTGAACCCCCTGAGGAAGGTCGTCTCCCTGATGCTACCAAAGGTTCTGATCACCTGAGGGAAGTTTTCGGTCACATGGGGTTGAGTGATCAGGACATTGTTGCTCTTTCTGGTGGACACACGCTGGGAAGATGCCATAAGGAGCGTTCAGGTTTTGAAGGGGCTTGGACGTCTAACCCGCTTATCTTTGACAACACTTACTTCACCGAGCTTCTTAGCGGAGAGAAGGAAGGACTCATCCAGCTGCCATCAGACAAGGCCCTTCTGAGCGACCCGGTTTTTCGCCCTTTTGTTGATAAATATGCTGCAGATGAGGATGCTTTTTTTGCTGATTATGCTGAGGCCCACCTAAAGCTTTCAGAGCTTGGATTTGCTGAAGTTTGAATGTCCTGAACGAAGTGCAGTTCCTGCAAAGTTTTCTTGTACTCTGGATGATTTTCGTGTCTTCTTTTGCTAGTGGCTGCTGTATATCATGTCATCTAAACAATAACTACGGTTGGTTCGCCGAATCCAATATCAAGCCTTCTTTTTGTTAATTTCTTAAATAAATCCATATTAGGCTGTTGGTTGTTATGGTTGTTATCAAGTCTGCTCTGTTTTTCTTTCCTGTGTTCTGTTGCACATGTTTTTGTAGCACGAGCTGTATCTCATTTTGTTTGCAGCATGCTGAAACTTTACGTGTCCTGTTTTTGTCCGAAGATCTGGATGTGTATGATATGTCTTAATGGTGACAGAATTTTAAAG

Sequences View:[Contig0889](Singleton Sequence)

Contig0889 1187  bases 
GCGTGGGGGTCATCGTTCCCTGCCGTGCTCTTTTTTTTCGCAACGGTAGCTGGGATCCGCCTCCCAATCGCCAAGCAATGGTGAAGTCATACCCGGTGGTGAGCGAGGAACACCTTAAAGCGGTTGATAAGTGTCGGAAGAAGCTCCGAGGTTTCATCGCCGAGAAGAACTGTGCTCCGCTCATGCTTCGACTGGCTTGGCACTCGGCTGGGACGTACGATGTCAAGACGAAGACGGGAGGGCCGTTCGGGACGATAAGGCACCCGGATGAGCTTGCACACGGGGCGAACAACGGCCTTAGTATCGCTGTGGGGTTGCTGGAGCCGATCAAGGAGCAGTTTCCGATCCTTTCGTATGCCGACTTCTACCAGCTTGCTGGAGTTGTTGCTGTTGAAGTCACTGGTGGACCTGAGGTTCCCTTCCATCCCGGAAGGGAGGATAAGCCTGAACCCCCTGAGGAAGGTCGTCTCCCTGATGCTACCAAAGGTTCTGATCACCTGAGGGAAGTTTTCGGTCACATGGGGTTGAGTGATCAGGACATTGTTGCTCTTTCTGGTGGACACACGCTGGGAAGATGCCATAAGGAGCGTTCAGGTTTTGAAGGGGCTTGGACGTCTAACCCGCTTATCTTTGACAACACTTACTTCACCGAGCTTCTTAGCGGAGAGAAGGAAGGACTCATCCAGCTGCCATCAGACAAGGCCCTTCTGAGCGACCCGGTTTTTCGCCCTTTTGTTGATAAATATGCTGCAGATGAGGATGCTTTTTTTGCTGATTATGCTGAGGCCCACCTAAAGCTTTCAGAGCTTGGATTTGCTGAAGTTTGAATGTCCTGAACGAAGTGCAGTTCCTGCAAAGTTTTCTTGTACTCTGGATGATTTTCGTGTCTTCTTTTGCTAGTGGCTGCTGTATATCATGTCATCTAAACAATAACTACGGTTGGTTCGCCGAATCCAATATCAAGCCTTCTTTTTGTTAATTTCTTAAATAAATCCATATTAGGCTGTTGGTTGTTATGGTTGTTATCAAGTCTGCTCTGTTTTTCTTTCCTGTGTTCTGTTGCACATGTTTTTGTAGCACGAGCTGTATCTCATTTTGTTTGCAGCATGCTGAAACTTTACGTGTCCTGTTTTTGTCCGAAGATCTGGATGTGTATGATATGTCTTAATGGTGACAGAATTTTAAAG

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ACJ38537.1	ascorbate peroxidase	Oncidium Gower Ramsey	249	440 bits (1132)	e-121	212/248 (85%)	225/248 (90%)	+3

KEGG Pathway	GO
Contig0889[2 Pathway]	Contig0889[10 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Carbohydrate Metabolism	00053	Ascorbate and aldarate metabolism	[PATH:ath00053]	Contig0889	AT3G09640	FPTEVCPM
Metabolism	Metabolism of Other Amino Acids	00480	Glutathione metabolism	[PATH:ath00480]	Contig0889	AT3G09640	FPTEVCPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G09640	AT3G09640	cytoplasm	GO:0005737	other cytoplasmic components
AT3G09640	AT3G09640	cytosol	GO:0005829	cytosol
AT3G09640	AT3G09640	L-ascorbate peroxidase activity	GO:0016688	other enzyme activity
AT3G09640	AT3G09640	L-ascorbate peroxidase activity	GO:0016688	other enzyme activity
AT3G09640	AT3G09640	response to oxidative stress	GO:0006979	response to stress
AT3G09640	AT3G09640	cytoplasm	GO:0005737	other cytoplasmic components
AT3G09640	AT3G09640	cytosol	GO:0005829	cytosol
AT3G09640	AT3G09640	L-ascorbate peroxidase activity	GO:0016688	other enzyme activity
AT3G09640	AT3G09640	L-ascorbate peroxidase activity	GO:0016688	other enzyme activity
AT3G09640	AT3G09640	response to oxidative stress	GO:0006979	response to stress

Gene Network Informations
Gene Network	Interact with..
Contig0889[interact with..]	Contig1254 Contig1177 Contig0889

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig1254	1057	gb	ACU24120.1	unknown	Glycine max	212	271 bits (692)	1e-70	137/159 (86%)	141/159 (88%)	+2
Contig1177	1261	gb	ABE77393.4	EPSP synthase	Allium macrostemon	522	598 bits (1542)	e-174	297/346 (85%)	320/346 (92%)	+1
Contig0889	1187	gb	ACJ38537.1	ascorbate peroxidase	Oncidium Gower Ramsey	249	440 bits (1132)	e-121	212/248 (85%)	225/248 (90%)	+3