Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPEAECP	FPEAECP043_D01_PDNR-F	1132

Contig Map:

(ProjectName=FPEAECP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FPEAECP043_D01_PDNR-F](Singleton Sequence)

FPEAECP043_D01_PDNR-F 1132  bases 
GAAGGCAAAACGCAGCTGGCTGCCTGGTTCCTCCCTGGCCTCTGCGAAAGATTTGAATCCAGCTGGGCTTCCCCTTCGAGGAGGAACAGACGAGGAGGGGAAGGAAGAGGGTCCTCTTGTCACCCATTCCAGGATTTGTGAGCTTGGATGAGGTAATTGGGAGATTTGAGATGGATTCCAAGGGGAAGAACGTTGGGATTCTGGCCATGGATATCTATTTCCCTCCTGCTTGCGTTCAGCAGGAATCATTAGAGGTTTTCGATGGAGCCAACAAGGGAAAGTACACGATTGGTCTTGGACAGGATTGTATGGCTTTCTGCACTGAGTTGGAAGACGTGATATCTATGAGCTTGACCGTTGTTACTTCCCTACTTGAGAAATATCAGATTGATCCGAAACAAATTGGCCGCTTGGAAGTTGGTAGTGAAACAGTGATAGATAAAAGCAAGTCTATCAAAACATGGTTGATGAGGATTTTTGAGGAATATGGGAATACTGATATTGAAGGAGTTGATTCTACAAATGCTTGCTATGGTGGAACCGCTGCTTTATTCAATTGTGTAAATTGGGTGGAAAGTTCTTCGTGGGATGGTAGATATGGACTTGTTGTCTGTACAGACAGTGCGGTTTATGCAGAAGGGCCAGCTCGGCCTACCGGCGGGGCTGCAGCTATAGCATTGTTGATTGGCCCGCATGCTCCAATTGTTTTTGAAAGTAAATATAGAGGGACTCACATGGCTCATGTTTACGACTTCTATAAGCCTATACTTGCCAGCGAATACCCGGTTGTGGACGGAAAGCTATCACAAACATGCTATCTCATGGCCTTAGATTCATGTTACAAGCGTTATTGTAGCAAGTATGAAAAATTTGAAGGGAAACCATTTTCAATTTCTGATGCTGACTCATTTGTATTCCATTCTCATACATAAGCTTGTGCAAAAAAGTTTTTCACGGCTATTACTTCATGACTTCTGCGTATTCGAGCCATGTGGATAAACAGTGCAAAGCAAACTGAGCCATTTCTAAATTTGTCAGTGATGAGAGCTATCAATCGCGACCTGGGAAGATCGCTCACAGTTACAAGCATTTTATGTATGAAAGTCAGCATCTTACATTTGATTCCAAACAG

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
dbj	BAF98278.1	hydroxymethylglutaryl-CoA synthase	Hevea brasiliensis	465	424 bits (1090)	e-117	217/296 (73%)	240/296 (81%), Gaps = 3/296 (1%)	+3

KEGG Pathway	GO
NoContigFind[4 Pathway]	NoContigFind[30 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Metabolism	Amino Acid Metabolism	00280	Valine, leucine and isoleucine degradation	[PATH:ath00280]	FPEAECP043_D01_PDNR-F	AT4G11820	FPEAECP
Metabolism	Carbohydrate Metabolism	00650	Butanoate metabolism	[PATH:ath00650]	FPEAECP043_D01_PDNR-F	AT4G11820	FPEAECP
Metabolism	Lipid Metabolism	00072	Synthesis and degradation of ketone bodies	[PATH:ath00072]	FPEAECP043_D01_PDNR-F	AT4G11820	FPEAECP
Metabolism	Metabolism of Terpenoids and Polyketides	00900	Terpenoid backbone biosynthesis	[PATH:ath00900]	FPEAECP043_D01_PDNR-F	AT4G11820	FPEAECP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT4G11820	AT4G11820	cellular_component	GO:0005575	unknown cellular components
AT4G11820	AT4G11820	hydroxymethylglutaryl-CoA synthase activity	GO:0004421	transferase activity
AT4G11820	AT4G11820	hydroxymethylglutaryl-CoA synthase activity	GO:0004421	transferase activity
AT4G11820	AT4G11820	"isopentenyl diphosphate biosynthetic process, mevalonate pathway"	GO:0019287	other cellular processes
AT4G11820	AT4G11820	"isopentenyl diphosphate biosynthetic process, mevalonate pathway"	GO:0019287	other metabolic processes
AT4G11820	AT4G11820	cellular_component	GO:0005575	unknown cellular components
AT4G11820	AT4G11820	hydroxymethylglutaryl-CoA synthase activity	GO:0004421	transferase activity
AT4G11820	AT4G11820	hydroxymethylglutaryl-CoA synthase activity	GO:0004421	transferase activity
AT4G11820	AT4G11820	"isopentenyl diphosphate biosynthetic process, mevalonate pathway"	GO:0019287	other cellular processes
AT4G11820	AT4G11820	"isopentenyl diphosphate biosynthetic process, mevalonate pathway"	GO:0019287	other metabolic processes
AT4G11820	AT4G11820	cellular_component	GO:0005575	unknown cellular components
AT4G11820	AT4G11820	hydroxymethylglutaryl-CoA synthase activity	GO:0004421	transferase activity
AT4G11820	AT4G11820	hydroxymethylglutaryl-CoA synthase activity	GO:0004421	transferase activity
AT4G11820	AT4G11820	"isopentenyl diphosphate biosynthetic process, mevalonate pathway"	GO:0019287	other cellular processes
AT4G11820	AT4G11820	"isopentenyl diphosphate biosynthetic process, mevalonate pathway"	GO:0019287	other metabolic processes
AT4G11820	AT4G11820	cellular_component	GO:0005575	unknown cellular components
AT4G11820	AT4G11820	hydroxymethylglutaryl-CoA synthase activity	GO:0004421	transferase activity
AT4G11820	AT4G11820	hydroxymethylglutaryl-CoA synthase activity	GO:0004421	transferase activity
AT4G11820	AT4G11820	"isopentenyl diphosphate biosynthetic process, mevalonate pathway"	GO:0019287	other cellular processes
AT4G11820	AT4G11820	"isopentenyl diphosphate biosynthetic process, mevalonate pathway"	GO:0019287	other metabolic processes
AT4G11820	AT4G11820	cellular_component	GO:0005575	unknown cellular components
AT4G11820	AT4G11820	hydroxymethylglutaryl-CoA synthase activity	GO:0004421	transferase activity
AT4G11820	AT4G11820	hydroxymethylglutaryl-CoA synthase activity	GO:0004421	transferase activity
AT4G11820	AT4G11820	"isopentenyl diphosphate biosynthetic process, mevalonate pathway"	GO:0019287	other cellular processes
AT4G11820	AT4G11820	"isopentenyl diphosphate biosynthetic process, mevalonate pathway"	GO:0019287	other metabolic processes
AT4G11820	AT4G11820	cellular_component	GO:0005575	unknown cellular components
AT4G11820	AT4G11820	hydroxymethylglutaryl-CoA synthase activity	GO:0004421	transferase activity
AT4G11820	AT4G11820	hydroxymethylglutaryl-CoA synthase activity	GO:0004421	transferase activity
AT4G11820	AT4G11820	"isopentenyl diphosphate biosynthetic process, mevalonate pathway"	GO:0019287	other cellular processes
AT4G11820	AT4G11820	"isopentenyl diphosphate biosynthetic process, mevalonate pathway"	GO:0019287	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
FPEAECP043_D01_PDNR-F[interact with..]	FPEAECP026_D12_PDNR-F Contig0531 FPEAECP033_E12_PDNR-F Contig0062 FPEAECP007_A06_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FPEAECP026_D12_PDNR-F	818	gb	ACG47565.1	60S ribosomal protein L17	Zea mays	171	293 bits (749)	2e-77	144/152 (94%)	147/152 (96%)	+3
Contig0531	1164	gb	ACF06597.1	60S ribosomal protein L7-like protein	Elaeis guineensis	246	247 bits (630)	3e-88	120/179 (67%)	151/179 (84%)	+3
FPEAECP033_E12_PDNR-F	1004	ref	NP_187967.1	60S ribosomal protein L7 (RPL7D)	Arabidopsis thaliana	244	369 bits (946)	e-100	183/244 (75%)	201/244 (82%)	+3
Contig0062	883	ref	NP_001150133.1	60S ribosomal protein L24	Zea mays	161	222 bits (566)	3e-56	110/119 (92%)	113/119 (94%)	+1
FPEAECP007_A06_PDNR-F	923	ref	NP_001150133.1	60S ribosomal protein L24	Zea mays	161	211 bits (536)	1e-52	103/111 (92%)	106/111 (95%)	+3