Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FPEAECP	Contig0531	1164

Contig Map:

(ProjectName=FPEAECP SequenceName=Contig0531):
FPEAECP028_H11_PDNR-F:
FPEAECP033_G07_PDNR-F:

Sequences View:[Contig0531](Contig Seguence)

1123 bases 
GGCGACGCTCCCGACCTGAACCCTAGCCGACGAAGGTCGATACGAGTGGAGTTGCGGCCTATGAGGAAGAAGATATATTGAGCGAAGTGTCCGAAACCCTCGACGAGAAAGTAGCAAGGAAGTCGCGACGTGGTATCGCAGGCGAAGGCATCGAGCAGCTCAACGAAATAATTCTAAATTCAGATAATCATGTTGGATGTGGATTCGAAGCCCCTGAATTATGTTCATGAAACCGTGCTGAGGAAAAGGAAGGCTAATGAAGAATGGGCCATAAAGAAGAGGGAACGGATTGATGCAAGAAAGAGATGTCGCATAGAGAACAGAACATTCGCCATTAAACGGCCAGAGCAGTTTGTGAAAGAGTATCGTGACAAGGATTTAGATCGGGTTCGAGCAAAACAAAGGCTAAAATTGAGGAAATTGCCAGCAACTGCCTTGAAGTCTGATTTACTCTTTGTCATCCGCACGCAAGGAAAGGACGATATGTGCTCGCAGACGAAAAAAATTTTGAAGAGGTTGAGGTTGAGCCATATTCTTAGTGGTGTATTTTTAAGAGCTAATGATGCGGTTCTCAGAATGTTAACTAGTGTTGAACCATTTGTTTCTTACGGCTATCCAAATTTGAAAAGCGTGAGAGAGTTGGTTTATAAAAAGGGCTGTGGAATGATAGACAAGCAACCAGTGCCTCTCACAGACAACAATGTGATCGAGCAGGCGCTGGGGAAGCATGGCATCATCTGCATTGAAGATCTTGTGCATGAGATCTGTACACTTGGTCCACATTTCAGGACAGTGACGAGCTTTCTACGGCCATTTCAACTTAAAAGGCCAGAGAGATTTCCTAAGATGTCTAAAAGGCCTTACAAAAATGGAGGTGATGCAGGCAACCGTGAAGAACGCATCAATGAATTTATTGACCTCTTAAACTGAATGAGGTAAACAGTACTGTTAATTTGTTTTGTTTCCCTGAAAACTTAATTATTATGATTGTATTTTCATCCTTATCTAGTTATTTTTTCATGCTAAAAACCCTTTTTAAGTATTCTTTGGCCTGATCCCTATGATATTTTTTTGGTAGTATTGTCTGTTAAGTATTCTGCCAAAAAAAAAAAAAAAAAAAAAA

Sequences View:[Contig0531](Singleton Sequence)

Contig0531 1123  bases 
GGCGACGCTCCCGACCTGAACCCTAGCCGACGAAGGTCGATACGAGTGGAGTTGCGGCCTATGAGGAAGAAGATATATTGAGCGAAGTGTCCGAAACCCTCGACGAGAAAGTAGCAAGGAAGTCGCGACGTGGTATCGCAGGCGAAGGCATCGAGCAGCTCAACGAAATAATTCTAAATTCAGATAATCATGTTGGATGTGGATTCGAAGCCCCTGAATTATGTTCATGAAACCGTGCTGAGGAAAAGGAAGGCTAATGAAGAATGGGCCATAAAGAAGAGGGAACGGATTGATGCAAGAAAGAGATGTCGCATAGAGAACAGAACATTCGCCATTAAACGGCCAGAGCAGTTTGTGAAAGAGTATCGTGACAAGGATTTAGATCGGGTTCGAGCAAAACAAAGGCTAAAATTGAGGAAATTGCCAGCAACTGCCTTGAAGTCTGATTTACTCTTTGTCATCCGCACGCAAGGAAAGGACGATATGTGCTCGCAGACGAAAAAAATTTTGAAGAGGTTGAGGTTGAGCCATATTCTTAGTGGTGTATTTTTAAGAGCTAATGATGCGGTTCTCAGAATGTTAACTAGTGTTGAACCATTTGTTTCTTACGGCTATCCAAATTTGAAAAGCGTGAGAGAGTTGGTTTATAAAAAGGGCTGTGGAATGATAGACAAGCAACCAGTGCCTCTCACAGACAACAATGTGATCGAGCAGGCGCTGGGGAAGCATGGCATCATCTGCATTGAAGATCTTGTGCATGAGATCTGTACACTTGGTCCACATTTCAGGACAGTGACGAGCTTTCTACGGCCATTTCAACTTAAAAGGCCAGAGAGATTTCCTAAGATGTCTAAAAGGCCTTACAAAAATGGAGGTGATGCAGGCAACCGTGAAGAACGCATCAATGAATTTATTGACCTCTTAAACTGAATGAGGTAAACAGTACTGTTAATTTGTTTTGTTTCCCTGAAAACTTAATTATTATGATTGTATTTTCATCCTTATCTAGTTATTTTTTCATGCTAAAAACCCTTTTTAAGTATTCTTTGGCCTGATCCCTATGATATTTTTTTGGTAGTATTGTCTGTTAAGTATTCTGCCAAAAAAAAAAAAAAAAAAAAAA

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ACF06597.1	60S ribosomal protein L7-like protein	Elaeis guineensis	246	247 bits (630)	3e-88	120/179 (67%)	151/179 (84%)	+3

KEGG Pathway	GO
Contig0531[1 Pathway]	Contig0531[36 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Translation	03010	Ribosome	[PATH:ath03010]	Contig0531	AT2G01250	FPEAECP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT2G01250	AT2G01250	cell wall	GO:0005618	cell wall
AT2G01250	AT2G01250	chloroplast	GO:0009507	chloroplast
AT2G01250	AT2G01250	chloroplast	GO:0009507	chloroplast
AT2G01250	AT2G01250	membrane	GO:0016020	other membranes
AT2G01250	AT2G01250	plasma membrane	GO:0005886	plasma membrane
AT2G01250	AT2G01250	plasma membrane	GO:0005886	plasma membrane
AT2G01250	AT2G01250	vacuole	GO:0005773	other cytoplasmic components
AT2G01250	AT2G01250	vacuole	GO:0005773	other intracellular components
AT2G01250	AT2G01250	structural constituent of ribosome	GO:0003735	structural molecule activity
AT2G01250	AT2G01250	translation	GO:0006412	protein metabolism
AT2G01250	AT2G01250	translation	GO:0006412	other cellular processes
AT2G01250	AT2G01250	translation	GO:0006412	other metabolic processes
AT2G01250	AT2G01250	transcription regulator activity	GO:0030528	other molecular functions
AT2G01250	AT2G01250	cytosolic ribosome	GO:0022626	cytosol
AT2G01250	AT2G01250	cytosolic ribosome	GO:0022626	ribosome
AT2G01250	AT2G01250	cytosolic ribosome	GO:0022626	other cytoplasmic components
AT2G01250	AT2G01250	cytosolic ribosome	GO:0022626	other intracellular components
AT2G01250	AT2G01250	large ribosomal subunit	GO:0015934	ribosome
AT2G01250	AT2G01250	large ribosomal subunit	GO:0015934	other cytoplasmic components
AT2G01250	AT2G01250	large ribosomal subunit	GO:0015934	other intracellular components
AT2G01250	AT2G01250	structural constituent of ribosome	GO:0003735	structural molecule activity
AT2G01250	AT2G01250	translation	GO:0006412	protein metabolism
AT2G01250	AT2G01250	translation	GO:0006412	other cellular processes
AT2G01250	AT2G01250	translation	GO:0006412	other metabolic processes
AT2G01250	AT2G01250	cytosolic large ribosomal subunit	GO:0022625	cytosol
AT2G01250	AT2G01250	cytosolic large ribosomal subunit	GO:0022625	ribosome
AT2G01250	AT2G01250	cytosolic large ribosomal subunit	GO:0022625	other cytoplasmic components
AT2G01250	AT2G01250	cytosolic large ribosomal subunit	GO:0022625	other intracellular components
AT2G01250	AT2G01250	chloroplast	GO:0009507	chloroplast
AT2G01250	AT2G01250	membrane	GO:0016020	other membranes
AT2G01250	AT2G01250	plasma membrane	GO:0005886	plasma membrane
AT2G01250	AT2G01250	plasma membrane	GO:0005886	plasma membrane
AT2G01250	AT2G01250	structural constituent of ribosome	GO:0003735	structural molecule activity
AT2G01250	AT2G01250	translation	GO:0006412	protein metabolism
AT2G01250	AT2G01250	translation	GO:0006412	other cellular processes
AT2G01250	AT2G01250	translation	GO:0006412	other metabolic processes

Gene Network Informations
Gene Network	Interact with..
Contig0531[interact with..]	Contig0531 FPEAECP033_E12_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig0531	1164	gb	ACF06597.1	60S ribosomal protein L7-like protein	Elaeis guineensis	246	247 bits (630)	3e-88	120/179 (67%)	151/179 (84%)	+3
FPEAECP033_E12_PDNR-F	1004	ref	NP_187967.1	60S ribosomal protein L7 (RPL7D)	Arabidopsis thaliana	244	369 bits (946)	e-100	183/244 (75%)	201/244 (82%)	+3