Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FEICP	EICPM017_H06_pDNR-F	1047

Contig Map:

(ProjectName=FEICP
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[EICPM017_H06_pDNR-F](Singleton Sequence)

EICPM017_H06_pDNR-F 1047  bases 
GTATCAAATGTTCCTTTAACTGAAACATCTGCCAGAACTGGTGATTCTCATAGATTAGCATCAGGTCCTAATGGTTTCAGTTCTACACTTGATAGAATGCCTTCTACCGCTAGAGAAGAAGGCATGCCAAAGTATTTGACTGATAGGTCATCAGTGGTAACAAATAATCAAACAAACTTTCAAGATCGTAACTCTGTTGTTGGGATGAGAGACTTGCATCACGTGGATCGTGCTTTTGATAGGTCCGGGGTATCTATTACGGGGAGGAGACCTGGTTCTTCAGGTGGTAAAATAAGCGCATCTGAACCCAAAGCCTTATCCGAAGAGACTCTAAGACATAAGTCAATATCAGCTATACGCGAGTTCTATAGCGCCGAGGATGAGAAGGAAGTTATTCTAAGCATCAAAGAATTAAGCACACCAAGTTTCTATCCTTCAATGGTTTCGCTTTGGGTCTGCGACTCTTTTGAAAGGAAAAACTTGGAGCGAAATCTGTTGGCACAACTTCTTGTGAACCTAAGCAAAGGTCATGACAGTTTGATTACGCGAGCTCAATTGGTTGAAGGGTTTGAATCAGTTCTGTCAACCTTGGAGGAGGCTGTGACTGATGCTCCAAGAGCTGCCGAATTTCTTGGCAGTTTTTTTGGAAAAATTGTTGTGGAGAATCTCGTTCCCTTGTGGGAGATCGCGAAATTGATCAGTGAAGGCGGTGAGCAACCCGGAGCCCTCGTGGATGCCGGCCTCGGGTCGGAGATTCTCGGTAATTTGTTGGAGTTTGTAAAAACAGAAAAAGGCGAGACCTTTGTGAACGAGATTCGATTGAACTCCAATCTGCGGCTGGAGGACTTCAGACCGGCGCACGCCTCTGCAAAAACGGTGAAGCTGGATGCATTTCTGGAAAGGTGAAGACTTTTTGTGCCTGCTAATACATTCTTCTCTGATCCCTAGGTACACCATCCATATCATTTTCTTTGCTTTAGGCATCTTACAGATATCAGTTTTTACTGACCCCATGTGTTCATTTCTTGTTCTATCCATGGAACGGCT

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002326844.1	predicted protein	Populus trichocarpa	1166	272 bits (696)	4e-71	148/301 (49%)	208/301 (69%), Gaps = 2/301 (0%)	+1

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[3 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Translation	03013	RNA transport	[PATH:ath03013]	EICPM017_H06_pDNR-F	AT3G60240	FEICP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT3G60240	AT3G60240	translation initiation factor activity	GO:0003743	nucleic acid binding
AT3G60240	AT3G60240	response to virus	GO:0009615	response to abiotic or biotic stimulus
AT3G60240	AT3G60240	response to abscisic acid stimulus	GO:0009737	other biological processes

Gene Network Informations
Gene Network	Interact with..
EICPM017_H06_pDNR-F[interact with..]	Contig3783 Contig4406 EICPM044_E08_pDNR-F EICPS048_E11_pDNR-F EICPS056_D04_pDNR-F EICPS013_B07_pDNR-F EICPS027_F09_pDNR-F EICPS027_G09_pDNR-F EICPS046_C10_pDNR-F EICPS048_A12_pDNR-F EICPS025_F07_pDNR-F EICPS027_E12_pDNR-F EICPS035_C08_pDNR-F EICPM017_H06_pDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig3783	1314	gb	ACF06475.1	ribosomal protein L30	Elaeis guineensis	112	90.5 bits (223)	4e-16	57/105 (54%)	62/105 (59%), Gaps = 36/105 (34%)	+1
Contig4406	1317	ref	XP_002305183.1	predicted protein	Populus trichocarpa	452	391 bits (1005)	e-107	213/356 (59%)	240/356 (67%), Gaps = 9/356 (2%)	+3
EICPM044_E08_pDNR-F	1048	gb	ABI48954.1	putative protein translation factor Sui1	Viola baoshanensis	113	57.8 bits (138)	6e-16	30/53 (56%)	38/53 (71%)	+3
EICPS048_E11_pDNR-F	739	gb	ACF06581.1	translational initiation factor eIF1	Elaeis guineensis	113	170 bits (430)	2e-40	87/113 (76%)	95/113 (84%)	+2
EICPS056_D04_pDNR-F	589	ref	XP_002305183.1	predicted protein	Populus trichocarpa	452	126 bits (317)	1e-27	62/101 (61%)	73/101 (72%), Gaps = 1/101 (0%)	+3
EICPS013_B07_pDNR-F	736	ref	XP_002528946.1	eif-1a, putative	Ricinus communis	145	204 bits (519)	7e-51	97/99 (97%)	99/99 (100%)	+3
EICPS027_F09_pDNR-F	678	ref	XP_002528946.1	eif-1a, putative	Ricinus communis	145	201 bits (510)	6e-50	95/97 (97%)	97/97 (100%)	+2
EICPS027_G09_pDNR-F	810	ref	XP_002528946.1	eif-1a, putative	Ricinus communis	145	218 bits (555)	5e-55	108/137 (78%)	111/137 (81%)	+1
EICPS046_C10_pDNR-F	852	ref	XP_002528946.1	eif-1a, putative	Ricinus communis	145	204 bits (519)	9e-51	97/99 (97%)	99/99 (100%)	+2
EICPS048_A12_pDNR-F	766	ref	XP_002528946.1	eif-1a, putative	Ricinus communis	145	204 bits (519)	8e-51	97/99 (97%)	99/99 (100%)	+1
EICPS025_F07_pDNR-F	737	gb	ACF06450.1	ribosomal protein L10	Elaeis guineensis	321	213 bits (541)	2e-53	111/155 (71%)	121/155 (78%)	+1
EICPS027_E12_pDNR-F	842	ref	XP_002308911.1	predicted protein	Populus trichocarpa	593	248 bits (634)	4e-64	133/214 (62%)	146/214 (68%)	+2
EICPS035_C08_pDNR-F	927	ref	XP_002308911.1	predicted protein	Populus trichocarpa	593	409 bits (1051)	e-112	205/252 (81%)	217/252 (86%)	+2
EICPM017_H06_pDNR-F	1047	ref	XP_002326844.1	predicted protein	Populus trichocarpa	1166	272 bits (696)	4e-71	148/301 (49%)	208/301 (69%), Gaps = 2/301 (0%)	+1