Contig View

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Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FCTEVCP	Contig1370	967

Contig Map:

(ProjectName=FCTEVCP SequenceName=Contig1370):
FCTEVCPM084_B01_PDNR-F:
FCTEVCPM090_D01_PDNR-F:
FCTEVCPM075_D12_PDNR-F:

Sequences View:[Contig1370](Contig Seguence)

Sequences View:[Contig1370](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ACF06501.1	SKP1	Elaeis guineensis	163	238 bits (608)	5e-61	122/160 (76%)	135/160 (84%), Gaps = 4/160 (2%)	+3

KEGG Pathway	GO
Contig1370[2 Pathway]	Contig1370[30 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	04141	Protein processing in endoplasmic reticulum	[PATH:ath04141]	Contig1370	AT5G42190	FCTEVCP
Genetic Information Processing	Folding, Sorting and Degradation	04120	Ubiquitin mediated proteolysis	[PATH:ath04120]	Contig1370	AT5G42190	FCTEVCP

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G42190	AT5G42190	cytoplasm	GO:0005737	other cytoplasmic components
AT5G42190	AT5G42190	protein binding	GO:0005515	protein binding
AT5G42190	AT5G42190	protein binding	GO:0005515	protein binding
AT5G42190	AT5G42190	protein binding	GO:0005515	protein binding
AT5G42190	AT5G42190	protein binding	GO:0005515	protein binding
AT5G42190	AT5G42190	protein binding	GO:0005515	protein binding
AT5G42190	AT5G42190	protein binding	GO:0005515	protein binding
AT5G42190	AT5G42190	protein binding	GO:0005515	protein binding
AT5G42190	AT5G42190	protein binding	GO:0005515	protein binding
AT5G42190	AT5G42190	ubiquitin-protein ligase activity	GO:0004842	other enzyme activity
AT5G42190	AT5G42190	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT5G42190	AT5G42190	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT5G42190	AT5G42190	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT5G42190	AT5G42190	SCF ubiquitin ligase complex	GO:0019005	other intracellular components
AT5G42190	AT5G42190	embryo development ending in seed dormancy	GO:0009793	developmental processes
AT5G42190	AT5G42190	cytoplasm	GO:0005737	other cytoplasmic components
AT5G42190	AT5G42190	protein binding	GO:0005515	protein binding
AT5G42190	AT5G42190	protein binding	GO:0005515	protein binding
AT5G42190	AT5G42190	protein binding	GO:0005515	protein binding
AT5G42190	AT5G42190	protein binding	GO:0005515	protein binding
AT5G42190	AT5G42190	protein binding	GO:0005515	protein binding
AT5G42190	AT5G42190	protein binding	GO:0005515	protein binding
AT5G42190	AT5G42190	protein binding	GO:0005515	protein binding
AT5G42190	AT5G42190	protein binding	GO:0005515	protein binding
AT5G42190	AT5G42190	ubiquitin-protein ligase activity	GO:0004842	other enzyme activity
AT5G42190	AT5G42190	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT5G42190	AT5G42190	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT5G42190	AT5G42190	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT5G42190	AT5G42190	SCF ubiquitin ligase complex	GO:0019005	other intracellular components
AT5G42190	AT5G42190	embryo development ending in seed dormancy	GO:0009793	developmental processes

Gene Network Informations
Gene Network	Interact with..
Contig1370[interact with..]	Contig1027 Contig0403 FCTEVCPM122_B05_PDNR-F Contig0410 FCTEVCPM073_D09_PDNR-F FCTEVCPM009_F03_PDNR-F FCTEVCPM019_C06_PDNR-F FCTEVCPM041_D02_PDNR-F FCTEVCPM120_F10_PDNR-F FCTEVCPM001_B11_PDNR-F Contig1370

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig1027	1267	dbj	BAA33801.1	cytosolic phosphoglycerate kinase 1	Populus nigra	401	521 bits (1341)	e-146	267/330 (80%)	288/330 (87%)	+2
Contig0403	926	gb	ACF06468.1	40S ribosomal protein S5	Elaeis guineensis	195	358 bits (920)	3e-97	180/190 (94%)	188/190 (98%)	+1
FCTEVCPM122_B05_PDNR-F	347	gb	ACF06479.1	ubiquitin extension protein-like protein	Elaeis guineensis	156	122 bits (307)	1e-26	55/62 (88%)	58/62 (93%)	+3
Contig0410	1216	ref	XP_002332589.1	predicted protein	Populus trichocarpa	648	546 bits (1407)	e-153	277/314 (88%)	284/314 (90%), Gaps = 1/314 (0%)	+3
FCTEVCPM073_D09_PDNR-F	543	gb	AAF34134.1	high molecular weight heat shock protein	Malus x domestica	650	130 bits (328)	4e-29	68/92 (73%)	72/92 (78%), Gaps = 3/92 (3%)	+2
FCTEVCPM009_F03_PDNR-F	1068	ref	XP_002523036.1	ATP synthase subunit d, putative	Ricinus communis	261	370 bits (951)	e-106	198/243 (81%)	212/243 (87%)	+1
FCTEVCPM019_C06_PDNR-F	915	gb	ACG47588.1	60S ribosomal protein L7a	Zea mays	255	313 bits (802)	2e-83	154/199 (77%)	164/199 (82%)	+1
FCTEVCPM041_D02_PDNR-F	1063	dbj	BAA93051.1	cysteine synthase	Allium tuberosum	325	416 bits (1070)	e-125	212/269 (78%)	228/269 (84%)	+1
FCTEVCPM120_F10_PDNR-F	871	gb	ACF06617.1	40S ribosomal protein S8	Elaeis guineensis	224	184 bits (466)	1e-44	93/124 (75%)	96/124 (77%)	+2
FCTEVCPM001_B11_PDNR-F	600	sp	P50433.1	GLYM_SOLTU RecName: Full=Serine hydroxymethyltransferase, mitochondrial; Short=SHMT; Short=Serine methylase; AltName:		518	229 bits (584)	1e-58	115/136 (84%)	127/136 (93%)	+3
Contig1370	967	gb	ACF06501.1	SKP1	Elaeis guineensis	163	238 bits (608)	5e-61	122/160 (76%)	135/160 (84%), Gaps = 4/160 (2%)	+3