Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FAECPM	FAECPM033_H04_PDNR-F	993

Contig Map:

(ProjectName=FAECPM
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FAECPM033_H04_PDNR-F](Singleton Sequence)

FAECPM033_H04_PDNR-F 993  bases 
GGAGTGAAAATGCATTCCTGTGATTTCCGCAATCCCTACGGCTCAGTCCCCCCATCCACCTGATAATATTATTTAGCAGTCAGGAACCTTCGTCCTCACATTGCACCCTCATCTAACACTACTTTTCCTTGCGACTCTCATTCCGGTTAAATCCCCCTCTCAACAGTCTGCAATGGCCGCCGTCTCCGTCGCCGCCGCTGCCCACACCATCATCGCGGCCAAGCCTCGTTTCTCTTCTCTGCTGCCTCTTTCCTCCCGCCGCCGCCCCTTTTCATCCGCTCTCTCCGGCCAGCCGCTCCGACTCCGCTCTCGAAGACTCGCCGTAGCTGCAGAGCCTCGCCTTATGAATGTCGTCTTCGCACAGAAGAAGGCTGTTGCAGTTCTCAAGGGCGACTCCAAGGTTGAGGGCGTTGTCACTCTCATCCAGGAAGACGACGGTCCCACGACTGTGAATGTACGTGTCACGGGACTAACTCCTGGATCTCACGGCTTCCATCTCCATGAGTTTGGTGATACTACCAATGGATGCATTTCAACAGGTGCCCATTTCAACCCTAAGGGCCTGACACATGGTGCTCCTGTAGATGAAGTTCGTCATGCCGGTGATTTGGGAAACATAGTTGCTAATGCTGATGGTATTGCTGAGGCGACAATTGTAGGTAACCAGATACCACTCGAGGGACCTAATTCTGTTGTTGGAAGAGCATTTGTAGTTCATGAGCTCGAGGATGATCTTGGAAAGGGAGGACATGAACTTAGCCTTACAACTGGAAATGCAGGTGGCAGATTAGCTTGCGTGTGGTTGGTTTGACTCCCCTTCAGTAATTAATATGGAGCATCCACCAGTGCTGCTGAAATTTTGTGCTGCTGAGAGGATTTTAGATTTCTTTATGAGATTTTATTCAGACAGCTTTAAGGGTAAAAAAAAATGAGTCTCATCATCTCATACGATGATGATTCTTGCCTTCTCTTGCTTCATGTGGTTTATGCTGC

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
				216	272 bits (696)	3e-71	132/154 (85%)	141/154 (91%)	+2

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[18 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Cellular Processes	Transport and Catabolism	04146	Peroxisome	[PATH:ath04146]	FAECPM033_H04_PDNR-F	AT2G28190	FAECPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT2G28190	AT2G28190	chloroplast	GO:0009507	chloroplast
AT2G28190	AT2G28190	chloroplast	GO:0009507	chloroplast
AT2G28190	AT2G28190	chloroplast stroma	GO:0009570	plastid
AT2G28190	AT2G28190	chloroplast stroma	GO:0009570	chloroplast
AT2G28190	AT2G28190	chloroplast stroma	GO:0009570	other cytoplasmic components
AT2G28190	AT2G28190	chloroplast stroma	GO:0009570	other intracellular components
AT2G28190	AT2G28190	thylakoid	GO:0009579	other intracellular components
AT2G28190	AT2G28190	apoplast	GO:0048046	extracellular
AT2G28190	AT2G28190	chloroplast	GO:0009507	chloroplast
AT2G28190	AT2G28190	superoxide dismutase activity	GO:0004784	other enzyme activity
AT2G28190	AT2G28190	response to light stimulus	GO:0009416	response to abiotic or biotic stimulus
AT2G28190	AT2G28190	response to oxidative stress	GO:0006979	response to stress
AT2G28190	AT2G28190	response to oxidative stress	GO:0006979	response to stress
AT2G28190	AT2G28190	response to stress	GO:0006950	response to stress
AT2G28190	AT2G28190	removal of superoxide radicals	GO:0019430	other cellular processes
AT2G28190	AT2G28190	removal of superoxide radicals	GO:0019430	other metabolic processes
AT2G28190	AT2G28190	response to copper ion	GO:0046688	other biological processes
AT2G28190	AT2G28190	response to iron ion	GO:0010039	other biological processes

Gene Network Informations
Gene Network	Interact with..
FAECPM033_H04_PDNR-F[interact with..]	FAECPM008_C07_PDNRF FAECPM037_A08_PDNR-F FAECPM033_H04_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FAECPM008_C07_PDNRF	990	gb	ABF99294.1	Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed	Oryza sativa (japonica cultivar-group)	149	310 bits (793)	2e-82	145/149 (97%)	148/149 (99%)	+2
FAECPM037_A08_PDNR-F	405	gb	ACB87919.1	ubiquitin conjugating enzyme 1	Malus x domestica	122	143 bits (360)	7e-33	68/70 (97%)	69/70 (98%)	+1
FAECPM033_H04_PDNR-F	993					216	272 bits (696)	3e-71	132/154 (85%)	141/154 (91%)	+2