Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FAECPM	FAECPM037_A08_PDNR-F	405

Contig Map:

(ProjectName=FAECPM
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FAECPM037_A08_PDNR-F](Singleton Sequence)

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
gb	ACB87919.1	ubiquitin conjugating enzyme 1	Malus x domestica	122	143 bits (360)	7e-33	68/70 (97%)	69/70 (98%)	+1

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[15 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	04120	Ubiquitin mediated proteolysis	[PATH:ath04120]	FAECPM037_A08_PDNR-F	AT2G02760	FAECPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT2G02760	AT2G02760	ubiquitin-protein ligase activity	GO:0004842	other enzyme activity
AT2G02760	AT2G02760	ubiquitin-protein ligase activity	GO:0004842	other enzyme activity
AT2G02760	AT2G02760	ubiquitin-protein ligase activity	GO:0004842	other enzyme activity
AT2G02760	AT2G02760	UV protection	GO:0009650	response to abiotic or biotic stimulus
AT2G02760	AT2G02760	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT2G02760	AT2G02760	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT2G02760	AT2G02760	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT2G02760	AT2G02760	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT2G02760	AT2G02760	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT2G02760	AT2G02760	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT2G02760	AT2G02760	vegetative to reproductive phase transition of meristem	GO:0010228	developmental processes
AT2G02760	AT2G02760	histone H2B ubiquitination	GO:0033523	protein metabolism
AT2G02760	AT2G02760	histone H2B ubiquitination	GO:0033523	other cellular processes
AT2G02760	AT2G02760	histone H2B ubiquitination	GO:0033523	other metabolic processes
AT2G02760	AT2G02760	histone H2B ubiquitination	GO:0033523	cell organization and biogenesis

Gene Network Informations
Gene Network	Interact with..
FAECPM037_A08_PDNR-F[interact with..]	FAECPM008_C07_PDNRF FAECPM037_A08_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
FAECPM008_C07_PDNRF	990	gb	ABF99294.1	Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed	Oryza sativa (japonica cultivar-group)	149	310 bits (793)	2e-82	145/149 (97%)	148/149 (99%)	+2
FAECPM037_A08_PDNR-F	405	gb	ACB87919.1	ubiquitin conjugating enzyme 1	Malus x domestica	122	143 bits (360)	7e-33	68/70 (97%)	69/70 (98%)	+1