Contig View

Back [Phalaenopsis Transcriptome]

Library Name: Contig Lists:

Contig Information:

Project Name	Query Name	Length of query
FAECPM	FAECPM029_B03_PDNR-F	1034

Contig Map:

(ProjectName=FAECPM
SequenceName=NoContigFind):

Sequences View:[NoContigFind](Contig Seguence)

Sequences View:[FAECPM029_B03_PDNR-F](Singleton Sequence)

FAECPM029_B03_PDNR-F 1034  bases 
CTCAACTACAAGGAGCAAAATTCCAGGGTCCGAACTGTTAGGGAGAATCTGAGAAATGCAAAGAAAGAGTTTTCCAAGACCGAAGATGACTTGAAGTCCCTCCAAAGTGTTGGTCAAATTATTGGAGAGGTTCTTCGACCTCTTGATAATGAACGTTTGATAGTTAAGGCTAGCAGTGGTCCTAGATATGTTGTTGGTTGCAGAAGCAAAGTTGATAAAGATAAGTTGACATCTGGGACTCGTGTGGTTCTTGACATGACCACCCTTACAATAATGCGTGCTCTTCCTCGGGAGGTCGACCCTGTTGTTTACAACATGCTTCATGAGGATCCTGGTAATATAAGCTATTCAGCTGTTGGAGGGTTATCTGATCAGATTCGGGAACTTCGCGAGTCTATCGAATTACCATTGGTGAATCCCGAACTTTTCCTTAGAGTTGGTATTAAACCTCCAAAGGGTGTTCTTCTTTATGGACCCCCTGGAACTGGAAAAACCTTACTGGCCAGGGCAATTGCGAGTAATATCGACGCCAATTTTCTAAAGGTTGTATCCAGTGCCATTATTGACAAATATATTGGAGAAAGTGCTAGATTGATAAGGGAGATGTTTGGTTATGCAAGGGATCACCAACCATGCATTATTTTCATGGATGAGATTGATGCCATCGGTGGTCGCCGTTTTAGTGAGGGAACTAGTGCTGACAGAGAGATTCAAAGAACGCTAATGGAGCTGCTCAATCAGTTGGATGGATTTGATCAACTTGGAAAGGTTAAAATGATCATGGCAACAAATCGTCCCGACGTTCTTGACCCAGCTCTTCTCCGTCCGGGCCGATTGGACCGGAAGATAGAGATTCCCTTGCCAAATGAACAGTCTAGGATGGAGATTCTTAAGATTCATGCAGCCGGTATTGCAAAACATGGCGAAATAGACTATGAAGCAGTAGTCAAACTAGCCGAAGGGTTCAATGGTGCCGACCTTCGAAATGTTGCACTGAAGCGGGGGATGTCAGCAATTCGTGCTGAACGTGATAT

Contig Annotation:

GenBank	Accession number (Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
ref	XP_002313775.1	predicted protein	Populus trichocarpa	392	645 bits (1663)	0.0	329/344 (95%)	337/344 (97%)	+1

KEGG Pathway	GO
NoContigFind[1 Pathway]	NoContigFind[9 GoTerm]

Pathway Informations
First-level terms	Second-level terms	KEGG pathway Num	KEGG pathway Name	KEGG pathway Description	contig Name	locusName	project Name
Genetic Information Processing	Folding, Sorting and Degradation	03050	Proteasome	[PATH:ath03050]	FAECPM029_B03_PDNR-F	AT5G43010	FAECPM

GO Informations
Locus Name	Go Name	Go Class Descriptions	GO id	Anotations01
AT5G43010	AT5G43010	cell wall	GO:0005618	cell wall
AT5G43010	AT5G43010	"proteasome regulatory particle, base subcomplex"	GO:0008540	other intracellular components
AT5G43010	AT5G43010	nucleus	GO:0005634	nucleus
AT5G43010	AT5G43010	ATPase activity	GO:0016887	hydrolase activity
AT5G43010	AT5G43010	ATPase activity	GO:0016887	hydrolase activity
AT5G43010	AT5G43010	ubiquitin-dependent protein catabolic process	GO:0006511	protein metabolism
AT5G43010	AT5G43010	ubiquitin-dependent protein catabolic process	GO:0006511	other cellular processes
AT5G43010	AT5G43010	ubiquitin-dependent protein catabolic process	GO:0006511	other metabolic processes
AT5G43010	AT5G43010	proteasome complex	GO:0000502	other intracellular components

Gene Network Informations
Gene Network	Interact with..
FAECPM029_B03_PDNR-F[interact with..]	Contig0657 FAECPM029_B03_PDNR-F

Query Name	Length of query	GenBank	Accession number(Best hits in the GenBank)	Annotation	Species	Length of homologous protein(Amino Acid)	Score	Expect value	Identities	similarity	Frame
Contig0657	1024	emb	CAC09486.2	H0811E11.2	Oryza sativa (indica cultivar-group)	389	519 bits (1336)	e-145	259/302 (85%)	282/302 (93%)	+3
FAECPM029_B03_PDNR-F	1034	ref	XP_002313775.1	predicted protein	Populus trichocarpa	392	645 bits (1663)	0.0	329/344 (95%)	337/344 (97%)	+1